Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20870 399 / 1e-141 ZTP29 zinc transporter 29, ZIP metal ion transporter family (.1) AT3G08650 60 / 6e-10 ZIP metal ion transporter family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031836 [exp] 403 / 2e-143 AT3G20870 402 / 2e-143 zinc transporter 29, ZIP metal ion transporter family (.1) Lus10035606 [exp] 59 / 1e-09 AT3G08650 822 / 0.0 ZIP metal ion transporter family (.1.2) Lus10003243 [exp] 57 / 4e-09 AT3G08650 842 / 0.0 ZIP metal ion transporter family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018800 [exp] 417 / 6e-149 AT3G20870 436 / 3e-156 zinc transporter 29, ZIP metal ion transporter family (.1) Potri.003G205100 [exp] 408 / 3e-144 AT3G20870 454 / 2e-162 zinc transporter 29, ZIP metal ion transporter family (.1) Potri.006G111200 [exp] 61 / 2e-10 AT3G08650 679 / 0.0 ZIP metal ion transporter family (.1.2) Potri.016G140500 [exp] 52 / 1e-07 AT3G08650 334 / 4e-108 ZIP metal ion transporter family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10031268 pacid=23151086 polypeptide=Lus10031268 locus=Lus10031268.g ID=Lus10031268.BGIv1.0 annot-version=v1.0 ATGGATTCTCAGGTTATCGTAGCGCTTGCTCTGTCTCTAGTTGGCGGCCTCAGCACTTCACTCGGTGCTCTTCTTGTGATAATTTCTGGGGCGCCAAGCT TGAAGATGCTTGGCCTTTTACAGGGATTTGCTTCTGGTCTAATGCTGAGCATTTCGTTCTTTGATCTCGCTCACAATGCCATTAATTCGATTGGCTTTCT CAAGGGGAATCTCTGGTTTTTCGGCGGGATTGTTTTCTTTGCTGTGATTGTGACATTCATTCCTGAACCACAACTATCTCCAGGGACGGAAGTCAAAAGC AAAAAGGAAAATGGCGATGAAGGGGGAAAGGATGTCATGAAAAAGCATCGTCGTCAGGTGTTCTACAGTGGGATCATCACTGCAGTAGGCATAAGCTTGC ACAATTTTCCGGAGGGCATGGCCGTGTTCCTCGGATCAATGAAGGGGCTTCGTGTCGGTCTTAATTTAGCCTTTGCCATTGCGCTGCATAATATCCCAGA GGGTGTTGCAGTTGCTCTTCCTGTTTATTTCGCAACACAGAGCAAGTGGGAGGCATTCAAACTGGCAACACTGTCTGGTTTCGCAGAGCCACTTGGTGTC GTAGCTGTAGCATATCTATTCCCAAGCAGCTTGAATCCAGAAATACTGGAGGGACTGCTGGGATCAGTCGGCGGAGTGATGGCGTTCCTCACATTACACG AGATGCTGCCGTTGGCTTTCGACTATGCTGGGCAGAAACAAGCTGTTAAAGCTGTGTTCCTCGGAATGGCCTTCATGTCTGCAAGCCTTTACTTTCTCCA GATCAGCTTACCTGAGGATATGAGCTTGTAG
AA sequence Show only first row Show all	>Lus10031268 pacid=23151086 polypeptide=Lus10031268 locus=Lus10031268.g ID=Lus10031268.BGIv1.0 annot-version=v1.0 MDSQVIVALALSLVGGLSTSLGALLVIISGAPSLKMLGLLQGFASGLMLSISFFDLAHNAINSIGFLKGNLWFFGGIVFFAVIVTFIPEPQLSPGTEVKS KKENGDEGGKDVMKKHRRQVFYSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAFAIALHNIPEGVAVALPVYFATQSKWEAFKLATLSGFAEPLGV VAVAYLFPSSLNPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFLGMAFMSASLYFLQISLPEDMSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031268 [exp]	0	1
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031836 [exp]	3.0	0.8576
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	6.3	0.8494
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	6.3	0.8372
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10024962 [exp]	9.9	0.8417
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	10.9	0.8561
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	11.0	0.8430
AT2G44300			Bifunctional inhibitor/lipid-t...		Lus10026220 [exp]	11.1	0.7838
AT1G33780			Protein of unknown function (D...		Lus10001286 [exp]	11.2	0.8557
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031177 [exp]	12.0	0.8367
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	12.2	0.8460

Compare expression of checked genes

Lus10031268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.