Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57670 344 / 8e-117 C2H2ZnF WIP2, NTT WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) AT1G51220 335 / 9e-114 C2H2ZnF AtWIP5, WIP5 WIP domain protein 5 (.1) AT3G20880 330 / 8e-111 C2H2ZnF WIP4 WIP domain protein 4 (.1) AT1G13290 293 / 6e-98 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) AT1G08290 285 / 3e-94 C2H2ZnF WIP3 WIP domain protein 3 (.1) AT1G34790 283 / 1e-93 C2H2ZnF WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G34370 104 / 7e-25 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 97 / 4e-22 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G03150 87 / 1e-18 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT5G66730 86 / 6e-18 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031838 [exp] 464 / 5e-164 AT3G57670 386 / 4e-133 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10004887 [exp] 305 / 1e-101 AT1G08290 357 / 9e-123 WIP domain protein 3 (.1) Lus10035044 [exp] 299 / 6e-100 AT1G13290 338 / 1e-116 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10021700 [exp] 299 / 1e-99 AT1G13290 333 / 2e-114 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10020597 [exp] 300 / 3e-99 AT1G08290 335 / 7e-114 WIP domain protein 3 (.1) Lus10029525 [exp] 293 / 7e-98 AT3G57670 297 / 1e-99 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10020923 [exp] 288 / 1e-95 AT1G34790 312 / 2e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10039613 [exp] 287 / 2e-95 AT3G57670 300 / 9e-101 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10033454 [exp] 285 / 2e-94 AT1G34790 315 / 1e-107 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205000 [exp] 353 / 6e-121 AT3G57670 377 / 2e-130 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.001G018900 [exp] 343 / 5e-117 AT1G51220 353 / 7e-122 WIP domain protein 5 (.1) Potri.016G052700 [exp] 339 / 5e-115 AT3G57670 389 / 7e-135 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.009G062300 [exp] 318 / 2e-107 AT3G57670 336 / 3e-114 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.001G267900 [exp] 318 / 4e-107 AT3G57670 328 / 2e-111 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.009G143700 [exp] 308 / 5e-103 AT1G08290 364 / 7e-126 WIP domain protein 3 (.1) Potri.004G183900 [exp] 306 / 2e-102 AT1G08290 352 / 4e-121 WIP domain protein 3 (.1) Potri.010G129000 [exp] 293 / 3e-98 AT1G13290 352 / 1e-122 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Potri.002G098200 [exp] 284 / 2e-94 AT1G34790 311 / 3e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.019G085400 [exp] 103 / 4e-24 AT1G34370 478 / 1e-165 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031271 pacid=23150971 polypeptide=Lus10031271 locus=Lus10031271.g ID=Lus10031271.BGIv1.0 annot-version=v1.0 ATGGATCCTTATTCCAATTACTTCAACAACAATGGATCCTTCAATAGTAACAACACCTCCACCACCACTAATTGGTACTACAATCTCCCTCACCACACCA ATAATTACCTCAACCATCTCCATTCTTCTTCCTCAAACACCGCCAATTACTTCTTTTCATCATCATCATCATCATCATCATCAAATCCTTACAACTACTA CAAATCATCACCACCATCTTCTCCCCCCATTAGAGAAGCTCTCCCTCTCCTCAGCCTAAGCCCCATTAGGCCCCACCACCACTTCTCCATGGATGTAGAT CATCATCAAGAAGAAGATCATGAGGAAGAAGATGATGATGAAGAGGAAACTGTGACTGTGGCTCTTCACTTAGGGCTCCCAAGCCATCAGATGGTTTCCT CTTCATCATGTGGTGAGAAAGTAGTGGATGAAGGAAGGGCAGTTTCGTCAACTGCTGATGATCATCAGGATGATGTTGTTGTTGATGATGATGATGTTGA GTGCTTGAACCTCAGCCAGAATGATCATCAGCAGGGACATAGTAGTAATTACACCGGCGGTGGTGTTCATCATCAGGGGATAATAAACAGGATTAACAGA GGACAGTACTGGATCCCAACTCCTGCTCAGATCCTCATTGGCCCTACTCAGTTCTCTTGCCCTCTCTGCTTCAAGACCTTCAACCGCTACAACAACATGC AGATGCACATGTGGGGCCACGGGTCGCAATACAGGAAGGGGCCCGAGTCCCTCCGGGGGACACAACCGACCGCAATGCTGAGGCTACCATGCTACTGCTG CGCCACAGGTTGTCGAAACAACATCGACCACCCGCGGGCTAAGCCACTCAAGGACTTCAGGACGCTGCAGACACACTACAAGAGGAAGCACGGGATCAAG CCCTTCATGTGCCGAAAGTGCGGTAAGGCGTTCGCTGTTCGGGGGGACTGGCGGACACACGAGAAGAACTGCGGGAAGCTGTGGTACTGCACGTGTGGTT CGGACTTCAAGCACAAGAGGTCGCTCAAGGACCACATCCGGTCGTTCGGGAACGGGCACGCTGCGTATGGGATCGACTCGTTCGAGGAGGAGGACGATGG AGGGTCGGATGTCGAGCAGCAGCAGCAGCCAATGCAGGATCATTGA
AA sequence Show only first row Show all	>Lus10031271 pacid=23150971 polypeptide=Lus10031271 locus=Lus10031271.g ID=Lus10031271.BGIv1.0 annot-version=v1.0 MDPYSNYFNNNGSFNSNNTSTTTNWYYNLPHHTNNYLNHLHSSSSNTANYFFSSSSSSSSSNPYNYYKSSPPSSPPIREALPLLSLSPIRPHHHFSMDVD HHQEEDHEEEDDDEEETVTVALHLGLPSHQMVSSSSCGEKVVDEGRAVSSTADDHQDDVVVDDDDVECLNLSQNDHQQGHSSNYTGGGVHHQGIINRINR GQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCATGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIK PFMCRKCGKAFAVRGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGNGHAAYGIDSFEEEDDGGSDVEQQQQPMQDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031271 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	4.0	0.9138
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10018304 [exp]	4.2	0.8964
AT5G24090		ATCHIA	chitinase A (.1)		Lus10010137 [exp]	6.3	0.8703
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	7.1	0.8833
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Lus10021836 [exp]	7.7	0.8748
AT4G34180			Cyclase family protein (.1)		Lus10001508 [exp]	10.2	0.8554
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10041390 [exp]	10.8	0.8690
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040708 [exp]	11.5	0.8490
					Lus10018215 [exp]	11.8	0.8689
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040707 [exp]	13.0	0.8327

Compare expression of checked genes

Lus10031271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.