Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19620 874 / 0 TOC75-V, EMB213, TOC75, ATOEP80, OEP80 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) AT3G44160 192 / 5e-55 Outer membrane OMP85 family protein (.1) AT3G48620 119 / 2e-29 Outer membrane OMP85 family protein (.1) AT3G46740 60 / 5e-09 MAR1, TOC75-III, TOC75 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) AT4G09080 46 / 8e-05 TOC75-IV, ATTOC75-IV translocon at the outer envelope membrane of chloroplasts 75-IV, TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV, Outer membrane OMP85 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031839 [exp] 1197 / 0 AT5G19620 1030 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10004104 [exp] 144 / 1e-37 AT3G44160 566 / 0.0 Outer membrane OMP85 family protein (.1) Lus10013360 [exp] 147 / 2e-36 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10016508 [exp] 72 / 1e-12 AT3G46740 1179 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10004978 [exp] 57 / 5e-08 AT3G46740 1117 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10001566 [exp] 56 / 1e-07 AT3G46740 1210 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019000 [exp] 914 / 0 AT5G19620 936 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.003G204900 [exp] 897 / 0 AT5G19620 892 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.009G017100 [exp] 181 / 6e-51 AT3G44160 598 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G215500 [exp] 175 / 1e-48 AT3G44160 581 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G072800 [exp] 55 / 2e-07 AT3G46740 1289 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Potri.003G158100 [exp] 44 / 0.0006 AT3G46740 1274 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0191 [flax] [poplar] POTRA PF07244 [flax] [poplar] POTRA Surface antigen variable number repeat CL0193 [flax] [poplar] MBB PF01103 [flax] [poplar] Omp85 Omp85 superfamily domain
Representative CDS sequence Show only first row Show all	>Lus10031272 pacid=23151058 polypeptide=Lus10031272 locus=Lus10031272.g ID=Lus10031272.BGIv1.0 annot-version=v1.0 ATGCCGCCGCGCAACGAAGGCGTTCGCTTTACTTCATCCTCCGTCAAAATCTCTCCTTTCTCCGACCAGCTTCACTTCCGCCGCTCTCCTCCGCCGCCGC CACTCTTTGCTCAGAAATTCCTATCTCAGCTCGTCAGAACGAAATCCTCCTTATCCAGTTTCGTTGACTCCCTGATTACTCGCACCCTCGGCTCGATTGA GCAGCATTCCGAAGCTCAAGGGCTTTACTCGCCAGCTAGAAGCTCGCCGCTTCTCTGTTCGGCGTCGCTTTCCCATAATCGGCCGGGAAACGAAGCTAAA TCATCGTCCCCACCGCCGATTCTATGTTCAGCGTCGTTGGCCCTGAGTCAAGCTGCTGAGTTGGAGACGTCGGTGACTCAGCAGCAGAAGGGCGGATCCC TCTCCGTGAGCCGTAATAACGAGGAAGAGAGGGTGTTAATAAGTGAGGTTTTGGTGATGAATAAGGACGGCGAGGAGCTTGAAATGAAGGACCTTGAAGC AGAGGCAATGGCGGCGTTGAAGGCCTGCCGTCCCAATTCAGCTCTCACTGTGAAGGAAGTTCAAGAGGATGTTCACAGGATCATTAACAGTGGCTACTTC TCCTCGTGCATGCCTGTGGCTGTAGACACTAGAGATGGGATTAGATTAGTTTTTCAGGTAGAGCCAAACCAAGAATTCAACGGGATTGTGTGTGAAGGGG CCAACGTTCTCCCCGCAAAGTTTGTAGAGGATGCTTTCCGTCACGAGTATGGGAAAGTTGTGAACATTAGGCGTTTGGATGATGCAATCACTGCTGTCAA TGGATGGTACATGGAGCGTGGCCTTTTTGGTTTGGTTTCAGGGGTTGAGATCCTTTCCGGAGGTATCATACGGTTGCAGGTGGCAGAAGCTGAAGTGAAT GACATATCCATACGTTTTCTAGACCGGAAGACTGGCGAACCGACTAAAGGGAAGACAAAGCCTGAAACGATACTTAGGCAACTGACAACAAAGAAGGGCC AGGTGTACAGTATGCTTCAAGGCAAAAGAGATGTGGATACTGTGCTAACTATGGGAATCATGGAAGACGTTAGCATCATCCCCCAACCTGCAGGAGATAC TGGCAAAGTTGATTTGATCATGAATGTTGTTGAACGTCCGAGTGGAGGTTTTTCTGCTGGTGGAGGAATATCCAGTGGGATTACAAGCGGCCCTTTATCT GGACTCATAGGGAGCTTTGCCTATTCTCATCGGAATGTTTTTGGAAGAAACCAGAAACTTAATGTCTCCCTGGAGAGGGGGCAAGTAGACTCCATATTCC GCATGAATTACACAGATCCATGGATTCAGGGAGATGATAAGAGGACCTCTAGAACAATTATGGTTCAGAATTCAAGAACTCCTGGGAATCTTGTTCATGG TAACCAATCTGGCGGTAGTAGTCTGACAATCGGTCGTGTGACTGCTGGTTTGGAATTTGGTCGACCACTCAGGCCAAAGTGGAGTGGAACTGCAGGACTT TTTTTCCAGCATGCGGGTGCTCGTGATGAAAACGGAAATCCTATCATTAAGGACTGTTACGGTAGCCCTCTTACTGCAAGTGGCAAGACATATGACGATA TGTTACTGGCAAAGCTTGAGACTGTCTACACCGGTTCGGCTGACCATGGCTCATCGATGGTCAGCCTACCAGTGTGGCCCGACTGGCTGTTCTTCAACAG AGTAAATGCTCGAGCCAGGAAGGGCGTGCAAGTTGGCCCTGCTCTCTTTCTCCTCAGCGTCTCGGGGGGACACGTTGTGGGCAAGTTCTCTCCCCATGAA GCATTCGCAATCGGAGGAACGAACAGCGTCAGAGGTTACGAAGAAGGTGCGGTGGGCTCAGGTCGATCCTACGTAGTCGGTTCTGGCGAACTCTCTTTCC CATTGTTGGGACCGGTGGAAGGAGTCATATTTGGTGACTACGGCACTGATCTGGGCTCTGGACCAACCGTACCAGGTGACCCTGCCGGAGCCCGGCTAAA GCACGGGAGCGGATACGGAGGCGGGCTCGGGGTCCGAGTCGAGTCCCCGTTAGGACCCTTGAGGCTCGAGTACGCCTACAACGATCGGCGCGAGAAAAGG TTCCACTTCGGCGTCGGTTACCGAAACTGA
AA sequence Show only first row Show all	>Lus10031272 pacid=23151058 polypeptide=Lus10031272 locus=Lus10031272.g ID=Lus10031272.BGIv1.0 annot-version=v1.0 MPPRNEGVRFTSSSVKISPFSDQLHFRRSPPPPPLFAQKFLSQLVRTKSSLSSFVDSLITRTLGSIEQHSEAQGLYSPARSSPLLCSASLSHNRPGNEAK SSSPPPILCSASLALSQAAELETSVTQQQKGGSLSVSRNNEEERVLISEVLVMNKDGEELEMKDLEAEAMAALKACRPNSALTVKEVQEDVHRIINSGYF SSCMPVAVDTRDGIRLVFQVEPNQEFNGIVCEGANVLPAKFVEDAFRHEYGKVVNIRRLDDAITAVNGWYMERGLFGLVSGVEILSGGIIRLQVAEAEVN DISIRFLDRKTGEPTKGKTKPETILRQLTTKKGQVYSMLQGKRDVDTVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLS GLIGSFAYSHRNVFGRNQKLNVSLERGQVDSIFRMNYTDPWIQGDDKRTSRTIMVQNSRTPGNLVHGNQSGGSSLTIGRVTAGLEFGRPLRPKWSGTAGL FFQHAGARDENGNPIIKDCYGSPLTASGKTYDDMLLAKLETVYTGSADHGSSMVSLPVWPDWLFFNRVNARARKGVQVGPALFLLSVSGGHVVGKFSPHE AFAIGGTNSVRGYEEGAVGSGRSYVVGSGELSFPLLGPVEGVIFGDYGTDLGSGPTVPGDPAGARLKHGSGYGGGLGVRVESPLGPLRLEYAYNDRREKR FHFGVGYRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031272 [exp]	0	1
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	1.0	0.9300
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	2.0	0.9149
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	5.7	0.8846
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	5.7	0.9002
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10018770 [exp]	7.0	0.8754
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	7.3	0.8684
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036543 [exp]	7.3	0.8762
					Lus10004594 [exp]	7.6	0.8444
AT4G13150			unknown protein		Lus10038175 [exp]	8.5	0.8614
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10043129 [exp]	12.2	0.8324

Compare expression of checked genes

Lus10031272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.