Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63440 1014 / 0 HMA5 heavy metal atpase 5 (.1) AT5G44790 793 / 0 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT5G21930 379 / 1e-116 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G33520 356 / 1e-107 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT4G30110 253 / 2e-70 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 248 / 6e-68 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 172 / 2e-45 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT4G37270 153 / 6e-38 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT3G57330 110 / 2e-24 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT1G17260 99 / 6e-21 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008309 [exp] 976 / 0 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10031840 [exp] 888 / 0 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10036225 [exp] 735 / 0 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10038364 [exp] 733 / 0 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10023777 [exp] 344 / 4e-103 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10038070 [exp] 280 / 2e-80 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10006955 [exp] 259 / 1e-72 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10025467 [exp] 259 / 2e-72 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10009789 [exp] 177 / 8e-48 AT5G21930 447 / 1e-149 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019100 [exp] 1497 / 0 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.003G125600 [exp] 1041 / 0 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 1030 / 0 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 984 / 0 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.003G075700 [exp] 780 / 0 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G158900 [exp] 776 / 0 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.018G047800 [exp] 386 / 1e-118 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.003G024000 [exp] 358 / 4e-108 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 352 / 6e-106 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.003G204801 [exp] 255 / 5e-79 AT1G63440 234 / 3e-72 heavy metal atpase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase CL0137 [flax] [poplar] PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10031273 pacid=23151139 polypeptide=Lus10031273 locus=Lus10031273.g ID=Lus10031273.BGIv1.0 annot-version=v1.0 ATGAGCTCGACTCGTAAGAATGGTGATGCGGCACGCAATGGGAGGGATGATGGCGATCACCTCAAGGTACCTCTACTGGAGCAGCCTTCTTCTGGTGGAC TTGCAACTGCAGATAAGAAGGTTCGAACTGCGAAATTCAAGATAGGGGACATAAAATGCACGTCTTGTACTACATCTATAGAGTCTGTGTTGAAAGAGGT TGCTGGAGTGGTGAATGTGGCGATATCTGTTCTTGATGGCCATTCTGCTGTCACTTATATGCCTGAGCTCACCACGGTTGATCAAATTAAGGAAACCATT GAAAATGCTGGGTTCCCGGTGGGGCATTTACCTGAGCAAGATGTTGCGGTGTGCCGGCTCAAGATAAAGGGAATGATGTGTACAAGCTGCTCCGAGTCAG TCGAACGTGCACTTCTGATGGTTGATGGGGTTAAGAAGGCGGTGGTGGGTCTTGCTCTGGAAGAAGCAAAAGTCCATTTCGATCCGAATGTTGTAGATAT CAGTGGAATCATTGAGTTTGTGGAAGATTCCGGGTTTGGAGCTGAGCTTGTCAGTTCTGGCACTGATGTAAACAAACTGCATCTGAAACTCGAGGGAGTT GATTCCTTGGAGGATTGTGAGCGGATTCGGTCCTTGCTCGAGTCAGCAAATGGTGTGAATCATGTCGAGATGGACCTGGTTGATCATAAGGTGACTATTA ACTACGATTCAGCCATTACTGGTCCAAGATATCTTATACAATTCATTGAGATGGCTTCCCCTAGTCCTGACATGTTTCGAGCAACGTTATACGTCCCGCC AAAGCAAAGGGAAACTGATCGGCTTCAAGAAACTCTATCGTATAGAAACCAATTCTTATGGAGCTGCATTTTCTTGGTCCCTATATTTCTATTTTCCATG GGACTCCCAATGCTTCATCCTTATGGAAACTGGCTGAACTATAAGATTTATCGTGCATTCAACGTTGGCATGCTCCTTCGGTGGATACTATGCACGCCTG TCCAATTTATTATTGGCAGAAGGTTTTATGTGGGAGCATACCATGCATTGAGACGGAAATCTGCCAATATGGATGTTTTGGTTGCATTAGGAACTAATGT TGCATACGTCTACTCTGTGTATGTAGTCATAAAAGCAATGATGTCCTACAATTTTGAAGGCCAAGATTTTTTCGAAACTAGTACAATGTTGATATCTTTC ATACTTTTGGGGAAGTATCTGGAGGTTGTAGCTAAAGGAAAGACTTCAGATGCTTTAGCAAAACTGACTGAGCTTTCTCCCGAAACAGCCTGTCTGCTAA CTATAGACAGCGATGGGAATGTTTTATCAGAGGAAGAAATTAGTACTCAACTGATACAGCGGAACGACATCATCAAGATTGTTCCGGGGTCAAAAGTAGC AGTTGATGGGATAGTTGTAGATGGACAAAGCCATGTAAACGAGAGTATGATCACGGGAGAGGCAAGACCCGTTTCCAAAAGACCCGGCGACAAGGTAATT GGTGGTACCATGAACGAGAATGGTTGCATACTTGTTAAGGCTACTCATGTCGGTTCAGAGGCTGCACTTTCCCAAATTGTTCAACTTGTAGAGGCAGCTC AATTGGCTAGAGCCCCTGTTCAGCAACTAGCCGACAGGATCTCCAGATATTTCGTTCCTACGGTTGTTGTTGCTGCTTTTATAACATGGCTGGTGTGGTT TATAGCTGGACAAGCAGACTTGTATCCCAAGCATTTGATACCAAAAGCCATGGATAAGTTCGAGCTCGCTTTGCAATTTGGTATTTCGGTGCTGGTGATT GCTTGTCCTTGTGCTTTGGGACTAGCTACACCGACAGCAGTTATGGTTGCCACTGGAAAAGGTGCTTCCCAAGGTGTGCTTATCAAGGGCGGAGATTCTC TCGAAAAGGCACATACGGTGAAGACAGTAGTCTTTGACAAGACTGGGACTTTGACCGCCGGGAAACCACAAGTAGTTAGTGCTGTGCTCTTCTCGAGTTT CTCGATGGAGGAATTCTGTGACATGGCAACTGCTGCAGAGGTGAACAGCGAACACCCGATAGCGAAATCTGTGGTGGCATACGCTAAGAGATTCCGCCAC AAGATCGGGTCTATCCCAGATCAGGTTCCTGAGGTGAAAGACTTCGAGGTACACACTGGAGCTGGAGTGAGTGGGAAAGTTGGCGACAGATTCGTTATTG TAGGGAACAGAAAGCTTATGCGGACGTATGAGGTCACTCTCCAGCCGGAGGTGGAGAAATTCATCCTCGAAAATGAAGAGTTGGCTCGAACATGCGTCCT GGTCGCCATTGATGGCAAGATAGCCGGAGCATTTGCAGTAACTGATCCGGTCAAACCTGAAGCTCAGCGTGTGATCTCGTACCTTCGTTCCATGGGGATC ACGAGCATCATGGTGACCGGGGATAACACTGCGACCGCAGCAGCCATTGCCAGAGATGTCGGCATCGATTACTTCTTCGCAGAGACGGATCCCCTCGGAA AAGCTGATAAGATCAAGGATCTTCAGGGGAAAGGGACCAAGGTGGCAATGGTGGGAGACGGAATCAACGACTCACCGGCATTGGTGGCAGCCGACGTAGG GATGGCCATCGGTGCCGGCACCAACGTGGCCATAGAAGCAGCCGATATAGTCCTGATGAAAAGCAATCTCGAAGACGTGGTCACAGCCATAGATTTGTCC AGGAAGACCATTGCTAGAATCCGGCTTAACTATGTGTGGGCGCTTGGTTACAACGTACTTGGTATGCCGATTGCTGCGGGAATCCTGTACCCGTTCACCG GGATCCGGCTGCCACCTTGGCTCGCCGGTGGCTGCATGGCTGCGTCGTCACTAAGCGTGGTGTGTTCTTCGCTGTTGTTGCAGTCGTACAAGAAGCCGTT GCGTGTAAGAGACGATTGGGATTGTACTTAG
AA sequence Show only first row Show all	>Lus10031273 pacid=23151139 polypeptide=Lus10031273 locus=Lus10031273.g ID=Lus10031273.BGIv1.0 annot-version=v1.0 MSSTRKNGDAARNGRDDGDHLKVPLLEQPSSGGLATADKKVRTAKFKIGDIKCTSCTTSIESVLKEVAGVVNVAISVLDGHSAVTYMPELTTVDQIKETI ENAGFPVGHLPEQDVAVCRLKIKGMMCTSCSESVERALLMVDGVKKAVVGLALEEAKVHFDPNVVDISGIIEFVEDSGFGAELVSSGTDVNKLHLKLEGV DSLEDCERIRSLLESANGVNHVEMDLVDHKVTINYDSAITGPRYLIQFIEMASPSPDMFRATLYVPPKQRETDRLQETLSYRNQFLWSCIFLVPIFLFSM GLPMLHPYGNWLNYKIYRAFNVGMLLRWILCTPVQFIIGRRFYVGAYHALRRKSANMDVLVALGTNVAYVYSVYVVIKAMMSYNFEGQDFFETSTMLISF ILLGKYLEVVAKGKTSDALAKLTELSPETACLLTIDSDGNVLSEEEISTQLIQRNDIIKIVPGSKVAVDGIVVDGQSHVNESMITGEARPVSKRPGDKVI GGTMNENGCILVKATHVGSEAALSQIVQLVEAAQLARAPVQQLADRISRYFVPTVVVAAFITWLVWFIAGQADLYPKHLIPKAMDKFELALQFGISVLVI ACPCALGLATPTAVMVATGKGASQGVLIKGGDSLEKAHTVKTVVFDKTGTLTAGKPQVVSAVLFSSFSMEEFCDMATAAEVNSEHPIAKSVVAYAKRFRH KIGSIPDQVPEVKDFEVHTGAGVSGKVGDRFVIVGNRKLMRTYEVTLQPEVEKFILENEELARTCVLVAIDGKIAGAFAVTDPVKPEAQRVISYLRSMGI TSIMVTGDNTATAAAIARDVGIDYFFAETDPLGKADKIKDLQGKGTKVAMVGDGINDSPALVAADVGMAIGAGTNVAIEAADIVLMKSNLEDVVTAIDLS RKTIARIRLNYVWALGYNVLGMPIAAGILYPFTGIRLPPWLAGGCMAASSLSVVCSSLLLQSYKKPLRVRDDWDCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10031273 [exp]	0	1
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031307 [exp]	2.4	0.8913
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	4.7	0.8554
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	13.0	0.8322
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015745 [exp]	14.6	0.8282
AT4G37420			Domain of unknown function (DU...		Lus10013221 [exp]	21.2	0.8803
AT5G15140			Galactose mutarotase-like supe...		Lus10007251 [exp]	24.0	0.8426
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10034872 [exp]	30.7	0.8183
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	56.4	0.8435
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006056 [exp]	59.0	0.7933
AT2G47710			Adenine nucleotide alpha hydro...		Lus10007043 [exp]	59.1	0.8553

Compare expression of checked genes

Lus10031273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.