Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63530 174 / 4e-54 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT3G19910 116 / 7e-31 RING/U-box superfamily protein (.1) AT5G52140 103 / 9e-27 RING/U-box superfamily protein (.1) AT3G47180 94 / 1e-23 RING/U-box superfamily protein (.1) AT5G10650 83 / 3e-18 RING/U-box superfamily protein (.1.2) AT3G15070 81 / 1e-17 RING/U-box superfamily protein (.1.2) AT5G24870 81 / 1e-17 RING/U-box superfamily protein (.1.2) AT1G53190 79 / 8e-17 RING/U-box superfamily protein (.1.2) AT4G34040 78 / 2e-16 RING/U-box superfamily protein (.1) AT2G15530 76 / 1e-15 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031842 [exp] 377 / 3e-134 AT3G63530 160 / 1e-48 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10019703 [exp] 182 / 1e-57 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10016416 [exp] 176 / 8e-55 AT3G63530 287 / 2e-98 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10002554 [exp] 167 / 1e-52 AT3G63530 122 / 1e-34 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10017385 [exp] 109 / 4e-28 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10010182 [exp] 107 / 2e-27 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10010372 [exp] 85 / 6e-19 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10005768 [exp] 81 / 3e-18 AT5G52140 90 / 7e-21 RING/U-box superfamily protein (.1) Lus10040389 [exp] 78 / 1e-16 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019600 [exp] 281 / 1e-96 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.003G204500 [exp] 273 / 3e-93 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G267700 [exp] 181 / 5e-57 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.009G062100 [exp] 172 / 2e-53 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.007G073200 [exp] 116 / 3e-31 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.005G090800 [exp] 116 / 3e-31 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.012G136400 [exp] 97 / 1e-24 AT5G52140 113 / 1e-30 RING/U-box superfamily protein (.1) Potri.005G180300 [exp] 94 / 2e-23 AT3G47180 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.002G080900 [exp] 93 / 3e-23 AT3G47180 117 / 7e-33 RING/U-box superfamily protein (.1) Potri.015G138700 [exp] 85 / 6e-21 AT5G52140 72 / 6e-16 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10031275 pacid=23151049 polypeptide=Lus10031275 locus=Lus10031275.g ID=Lus10031275.BGIv1.0 annot-version=v1.0 ATGAGTAATTGGAGTGGTTCAAGCATGGAGAATAGCAGCTACCCTTATAATTCAGCTGGAAGCTTCATGGAATACTTCCAAGGCCTCACCTTTGAACATG TCAATTTCATCTTTGATGGCCATGCTCCTCAGGAGAGCACTTCTAGCTTGTATAAATTTGGTGCCTCTCGGACTGGGAGTAGTTCCTATTACGATCCGAG TCCTGATCGTGGATCCCAGATTGATTCATTTGGAAGGTCCTTTGATGAAGTACATGATCATGAGAACATAACCACCCATGGCACTCCTCTTGACTGTGTG GGGAGACATCATAGCGATCCCGATTACCAGGCTGTATGGCAAGACATGTTCGATCCCGACAGTATGACTTACGAGGAACTGCTGGAACTAGGCGAGGCAG TCGGAACTCAGAATCGAGGACTGTCCAAAGAACTCATCTCTTCCCTTCCGGTCTCTAAATACAAGTGCTGTTTCTTCTCGAGGCGGAAATCACGAACCGA AAGGTGTGTAATATGTCAAATGGAGTACAAGCGAGGCGAGAAGCGCATCACCCTACCATGTAAACACATCTACCATGCCAGTTGCGGATCAAAATGGCTC AGCATCAATAAGGCGTGCCCTATATGTTACACCGAAGTGTTCAGCGGCGCATCGAACATCAAGAAATAG
AA sequence Show only first row Show all	>Lus10031275 pacid=23151049 polypeptide=Lus10031275 locus=Lus10031275.g ID=Lus10031275.BGIv1.0 annot-version=v1.0 MSNWSGSSMENSSYPYNSAGSFMEYFQGLTFEHVNFIFDGHAPQESTSSLYKFGASRTGSSSYYDPSPDRGSQIDSFGRSFDEVHDHENITTHGTPLDCV GRHHSDPDYQAVWQDMFDPDSMTYEELLELGEAVGTQNRGLSKELISSLPVSKYKCCFFSRRKSRTERCVICQMEYKRGEKRITLPCKHIYHASCGSKWL SINKACPICYTEVFSGASNIKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031275 [exp]	0	1
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10008148 [exp]	2.0	0.7767
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10005611 [exp]	8.1	0.7451
AT4G00170			Plant VAMP (vesicle-associated...		Lus10010360 [exp]	14.3	0.7856
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10010471 [exp]	19.3	0.7126
AT1G10750			Protein of Unknown Function (D...		Lus10029116 [exp]	27.9	0.6869
AT1G49740			PLC-like phosphodiesterases su...		Lus10019843 [exp]	42.4	0.6315
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	45.3	0.7234
AT2G41150			unknown protein		Lus10022403 [exp]	46.5	0.7387
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	52.0	0.7233
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	54.2	0.7144

Compare expression of checked genes

Lus10031275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.