Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19350 529 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G19130 362 / 1e-122 ATRBP47B RNA-binding protein 47B (.1) AT5G54900 347 / 2e-117 ATRBP45A RNA-binding protein 45A (.1) AT1G47500 347 / 8e-117 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 345 / 1e-115 ATRBP47C RNA-binding protein 47C (.1.2) AT1G49600 344 / 2e-115 ATRBP47A RNA-binding protein 47A (.1) AT1G11650 341 / 1e-114 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 333 / 1e-111 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 145 / 3e-39 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G17370 140 / 2e-37 UBP1B oligouridylate binding protein 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031844 [exp] 756 / 0 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021754 [exp] 366 / 6e-124 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10012070 [exp] 354 / 5e-120 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10014029 [exp] 347 / 5e-118 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10018345 [exp] 348 / 8e-118 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019889 [exp] 338 / 8e-115 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10012071 [exp] 333 / 6e-113 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10027373 [exp] 323 / 5e-109 AT5G19350 293 / 2e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027911 [exp] 314 / 2e-105 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054400 [exp] 619 / 0 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G105300 [exp] 379 / 3e-129 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.004G143400 [exp] 372 / 2e-126 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 371 / 4e-126 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 364 / 2e-123 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.001G423400 [exp] 353 / 6e-119 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G138400 [exp] 350 / 2e-118 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G017200 [exp] 345 / 4e-116 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G279600 [exp] 143 / 2e-38 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.018G002300 [exp] 141 / 1e-37 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10031277 pacid=23151001 polypeptide=Lus10031277 locus=Lus10031277.g ID=Lus10031277.BGIv1.0 annot-version=v1.0 ATGGCGGCACCACCAACGGCGATGCATTACCATCAACCGGCGACCCTGGAAGAAGTCCGAACTCTTTGGATTGGGGATTTACAGTACTGGGCCGACGAAA ACTACCTCACCTCTTGCTTCTCCCACACCGGCGAGTTGGTTTCCGTCAAAATCATCCGTAACAAGCTGACTGGCCAGCCGGAAGGATACGGGTTTGTGGA GTTCGTTTCTCACCAGGCAGCTGAAAGGATCCTACAGACGTACAATGGGACTCAAATGCCGGGGACTGAGCTGACATTCAGGCTGAACTGGGCATCTTTC GGAACTGGAGAAAGGCGTCCCGATGCAGGCCCCGAACATTCGATCTTCGTAGGGGATTTGGCTCCCGATGTTACGGATTTGTTACTGCAGGAGACGTTCA GGACTCAGTATGTGTCTGTCAGAGGAGCTAAGGTTGTGACTGATCCGAATACCGGGCGTTCTAAGGGGTACGGGTTTGTTAAGTTTGCCGATGAGAATGA GAGGAACCGTGCAATGAGTGAAATGAATGGCGTTTATTGCTCGACTAGGCCGATGCGTATCAGTGCTGCTACCCCCAAGAAAACTACTGGTTATCAGCAG CAGTATCCTGCCGCTGTGAAAGCCGTGTATCCAGCTCCCGCGTATACAGCCCCAGTGCAGGTAGTTTCAGCAGCTGATAATGACCTCACGAATACCACTA TATTCGTTGGAAACTTAGATCCTGCAATCACGGAAGAGGAGCTGAAACAGACATTTTCTCAGCTCGGAGAGATTGTGTATGTCAAAATTCCTGTTGGCAG AGGATGTGGCTTTGTGCAATTTTCTGCTAGAGCATCTGCCGAGGATGCTATGCAAAGGATGCAGGGCCAGTTCATTGGTCAGCAGCCAGTTCGTATTTCT TGGGGCAAGAAGCAGGACATTACTGCTAGTTGGGGTCAGCAAGTAGATCCATGGAGTGCTTATTATGGTTATGGACAACAAGGCTACGATGCGTATGGCT ACGGAGCAGCTGCTCAGGATCCGTCAATGTATGCATACGCTGGATACACGGGCTATCAACAGGTTGAAGGTGTTCAAGACATGACTGGTGGTGTCCCAAT GGTGGATCAGAGGGAAGAGATCTACGATCCTTTGGCAGCTCCTGATGTTGATAAGCTAAATTCAGCTTACCTTGCTGTTCACGGCAGTGCAATCTTAGGG CGGCCGTTATGGATGAGAACATCGTCACTTTCACAAGCTTAG
AA sequence Show only first row Show all	>Lus10031277 pacid=23151001 polypeptide=Lus10031277 locus=Lus10031277.g ID=Lus10031277.BGIv1.0 annot-version=v1.0 MAAPPTAMHYHQPATLEEVRTLWIGDLQYWADENYLTSCFSHTGELVSVKIIRNKLTGQPEGYGFVEFVSHQAAERILQTYNGTQMPGTELTFRLNWASF GTGERRPDAGPEHSIFVGDLAPDVTDLLLQETFRTQYVSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQ QYPAAVKAVYPAPAYTAPVQVVSAADNDLTNTTIFVGNLDPAITEEELKQTFSQLGEIVYVKIPVGRGCGFVQFSARASAEDAMQRMQGQFIGQQPVRIS WGKKQDITASWGQQVDPWSAYYGYGQQGYDAYGYGAAAQDPSMYAYAGYTGYQQVEGVQDMTGGVPMVDQREEIYDPLAAPDVDKLNSAYLAVHGSAILG RPLWMRTSSLSQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031277 [exp]	0	1
AT5G45590			Ribosomal protein L35 (.1)		Lus10012140 [exp]	3.3	0.9340
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016539 [exp]	4.9	0.9214
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	5.5	0.9249
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	7.1	0.9312
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	8.0	0.9127
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10035658 [exp]	8.4	0.9166
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	8.5	0.9236
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	9.2	0.9222
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	9.4	0.9158
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	10.8	0.9168

Compare expression of checked genes

Lus10031277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.