Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48680 371 / 2e-131 AtCAL2, GAMMACAL2 ,GAMMA CAL2 gamma carbonic anhydrase-like 2 (.1) AT5G63510 369 / 2e-130 GAMMACAL1 ,GAMMA CAL1 gamma carbonic anhydrase like 1 (.1.2) AT5G66510 143 / 1e-41 CA3, GAMMACA3 ,GAMMA CA3 gamma carbonic anhydrase 3 (.1.2) AT1G19580 142 / 6e-41 GAMMACA1 ,GAMMA CA1 gamma carbonic anhydrase 1 (.1.2) AT1G47260 139 / 5e-40 APFI, GAMMACA2 ,GAMMA CA2 gamma carbonic anhydrase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031845 [exp] 434 / 2e-156 AT3G48680 403 / 5e-144 gamma carbonic anhydrase-like 2 (.1) Lus10031847 [exp] 194 / 2e-63 AT3G48680 179 / 7e-58 gamma carbonic anhydrase-like 2 (.1) Lus10028321 [exp] 142 / 5e-41 AT1G19580 467 / 1e-168 gamma carbonic anhydrase 1 (.1.2) Lus10024267 [exp] 142 / 6e-41 AT1G19580 476 / 3e-172 gamma carbonic anhydrase 1 (.1.2) Lus10001959 [exp] 142 / 6e-41 AT1G19580 476 / 3e-172 gamma carbonic anhydrase 1 (.1.2) Lus10041768 [exp] 141 / 9e-41 AT1G19580 459 / 2e-165 gamma carbonic anhydrase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G100400 [exp] 381 / 2e-135 AT3G48680 389 / 3e-138 gamma carbonic anhydrase-like 2 (.1) Potri.015G098600 [exp] 377 / 1e-133 AT3G48680 374 / 2e-132 gamma carbonic anhydrase-like 2 (.1) Potri.002G034100 [exp] 145 / 2e-42 AT1G19580 497 / 2e-180 gamma carbonic anhydrase 1 (.1.2) Potri.005G229000 [exp] 144 / 5e-42 AT1G19580 498 / 0.0 gamma carbonic anhydrase 1 (.1.2) Potri.005G120800 [exp] 141 / 9e-41 AT1G19580 480 / 7e-174 gamma carbonic anhydrase 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031278 pacid=23151073 polypeptide=Lus10031278 locus=Lus10031278.g ID=Lus10031278.BGIv1.0 annot-version=v1.0 ATGGCGACTGCCCTAGCTCGCATCTCCAAGAAGGCCGTAGCAGCGGCTTCAGTATCCCAATACCGTCAGCTGCTAGTCACACGCGCCGTCGCCACCGAGG CGGCATCGGCGTCGTCATCGAAAACGATCACCTCGTCTCCGGATCAAGTGAAGTGGGATTACCGAGGTCAGCGGCAGATAATCCCTCTGGGCCAGTGGCT CCCCAAGATCGCTGTCGACGCTTACGTCGCGCCGAACGTCGTCCTCGCCGGTCAGGTCAGGGTCTGCGACGGAGCTTCCGTGTGGAACGGGTGTGTTCTC CGGGGCGATCTCAACAAAATCACCGTCGGATTCTGCTCCAATGTCCAGGAGCGCTCTGTGCTCCATGCCGCCTGGAATTCCCCCACAGGACTGCCAGCCG AAACATCCATCGACAGGTACGTAAGCGTGGGTGCATACTGCCTGTTACGATCGTGCACGATCGAGCCGGAATGCATCATCGGGCAGCATTCGATCCTGAT GGAAGGATCTTTGGTGGAGACACACTCCATTCTGGAAGCCGGGTCTGTCGTCCCACCGGGGAGGAGAATTCCAACTGGAGAACTCTGGGCCGGGAATCCT GCTAGGTTCGTTCGCACTTTGACACATGAGGAGACGTTGGAGATCCCTAAACTCGCGGTGGCAATCAACGATCTCAGCAACGCCTATTTCTCAGAGTTCC TGCCCTACTCAACTGTTTACTTAGAAGTTGAGAAACTTAAGAAGAAGTTGGGAGTCTCTATCTAA
AA sequence Show only first row Show all	>Lus10031278 pacid=23151073 polypeptide=Lus10031278 locus=Lus10031278.g ID=Lus10031278.BGIv1.0 annot-version=v1.0 MATALARISKKAVAAASVSQYRQLLVTRAVATEAASASSSKTITSSPDQVKWDYRGQRQIIPLGQWLPKIAVDAYVAPNVVLAGQVRVCDGASVWNGCVL RGDLNKITVGFCSNVQERSVLHAAWNSPTGLPAETSIDRYVSVGAYCLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVVPPGRRIPTGELWAGNP ARFVRTLTHEETLEIPKLAVAINDLSNAYFSEFLPYSTVYLEVEKLKKKLGVSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031278 [exp]	0	1
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031845 [exp]	1.7	0.9297
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	2.0	0.9215
AT4G12340			copper ion binding (.1)		Lus10024588 [exp]	3.2	0.9043
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	3.5	0.9129
AT4G12340			copper ion binding (.1)		Lus10032225 [exp]	3.7	0.8961
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	5.5	0.8996
AT5G57460			unknown protein		Lus10000167 [exp]	6.0	0.9114
AT4G24330			Protein of unknown function (D...		Lus10019957 [exp]	6.8	0.8629
AT3G44150			unknown protein		Lus10016181 [exp]	9.5	0.8848
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	11.3	0.8923

Compare expression of checked genes

Lus10031278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.