Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36250 526 / 0 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT1G44170 447 / 5e-154 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 428 / 1e-145 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT3G66658 139 / 8e-36 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G79440 123 / 3e-30 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G48170 120 / 3e-29 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G74920 114 / 2e-27 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G23800 100 / 1e-22 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G24503 98 / 1e-21 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 94 / 2e-20 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031849 [exp] 903 / 0 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10002557 [exp] 781 / 0 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10041806 [exp] 523 / 0 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10028357 [exp] 514 / 2e-180 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10027372 [exp] 494 / 3e-174 AT4G36250 351 / 4e-118 aldehyde dehydrogenase 3F1 (.1) Lus10029684 [exp] 440 / 3e-151 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 436 / 1e-149 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10025681 [exp] 435 / 5e-149 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10015688 [exp] 421 / 4e-143 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G259100 [exp] 731 / 0 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 545 / 0 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.002G081800 [exp] 452 / 5e-156 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G179300 [exp] 444 / 5e-153 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.001G412900 [exp] 446 / 1e-152 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.005G069800 [exp] 439 / 1e-149 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.008G106000 [exp] 134 / 7e-34 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.012G075600 [exp] 120 / 2e-29 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 118 / 2e-28 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.015G070600 [exp] 115 / 2e-27 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10031280 pacid=23151050 polypeptide=Lus10031280 locus=Lus10031280.g ID=Lus10031280.BGIv1.0 annot-version=v1.0 ATGGAGACTGATCTGGAGGAAATGAGGGATTACTTCAGAAGTGGGAAGACCAAAGATGGAGAGTGGAGAAAAGCTCAGCTCAAAGGGTTGCTAGAATTCC TCAAGAGGAACGAGTCTGAGATCTTCCAGGCACTGATGCAGGACTTGGGTAAGCCCCAAGTTGAGGCTTACAGGGATGAGGTTGGGACATTGTTAAAGTC TGTGAATTTCGCTTTGAAAGGATTGAAAGGGTGGATGTCAAGTAAGGAGGCTAAGCTCCCAAGTATTGCTCTGTTGTCTTCTGCAGAGTTGGTTCCAGAG CCACTTGGACTTGTCCTCATTATTTCATCTTGGAACTTCCCTTTTGGGCTGTCCTTGGAGCCATTGATAGGAGCAATAGCAGCAGGGAACACCATGGTTT TGAAGCCTTCAGAACTTGCACCTGCATCTGCTAATGTCCTGTCTAATATCCTCCCAAATTACCTTGATTCTAAAGCTATCAGGGTCGTCCAAGGAGGGCC GGATGTCGGCGAACAACTACTACAGCAAAAATGGGACAAAATCTTCTTCACTGGAAGTGCACGAGTGGGAAGGACTATCATGACTGCTGCAGTGAAACAT CTAACACCAGTTGTTCTTGAGCTGGGAGGAAAGTGCCCTGCAGTTCTTGATTCCTTGGCTTCATGGGAATTGAAGGTGGCTGTGAATCGTATAATCGGCT CGAAGTTTGGACCGTGTGCTGGTCAAGCATGCATAGCAGTTGATTACATTCTCGTGGAGAAGAGATTAGCTTCTGCTGTGGTGGAGTTGATGAAAGTATT GGTCATGAAAATGTTTGGAGAAAACCCAAGAGATTCAGTTTCCATAACGAGAATAGTCAACAAGCAACACTTCTCAAGATTGAAGAGCCTTCTCACTGAT CCATCAGTCGAATCATGCGTTGTCTATGGCGGATTCGTGGATGAAGAACATCTATTCATTGAGCCAACTATTCTGGTAGATCCACCACTTGACTCCCCAA TCATGACTGAAGAAATCTTTGGCCCATTGCTTCCAATTATTACAGTGGAGAAGATCGAAGACAGCATCAACTTCATAAACGCAAGGCCGAAGCCACTAGC CATATACGGCTTCACGAAGAACAAGTCATTCAGCAAAAGACTTCTCTCTGAAACATCATCAGGGAGCTTGGTGTTCAACGATGCAGTGATTCAGTATGCA GCAGATAGCTTGCCGTTCGGAGGTATCGGTGGGAGCGGGATAGGGAAGTACCACGGCAAGTTCTCGTTCGAGACGTTCAGCCATTACAAGGCGGTCGCAA GGCGAAGCTACCTGACCGATTTCTGGTTCAGGTTTCCTCCATGGAACCATCACAAGTTGTTGCTGTTTGAAGCTAGCTACCACCTTGATTACCTCAGGTT GGTACTGGTGATCCTTGGCCTGAGGAAGTCTAGATATGGATCATAA
AA sequence Show only first row Show all	>Lus10031280 pacid=23151050 polypeptide=Lus10031280 locus=Lus10031280.g ID=Lus10031280.BGIv1.0 annot-version=v1.0 METDLEEMRDYFRSGKTKDGEWRKAQLKGLLEFLKRNESEIFQALMQDLGKPQVEAYRDEVGTLLKSVNFALKGLKGWMSSKEAKLPSIALLSSAELVPE PLGLVLIISSWNFPFGLSLEPLIGAIAAGNTMVLKPSELAPASANVLSNILPNYLDSKAIRVVQGGPDVGEQLLQQKWDKIFFTGSARVGRTIMTAAVKH LTPVVLELGGKCPAVLDSLASWELKVAVNRIIGSKFGPCAGQACIAVDYILVEKRLASAVVELMKVLVMKMFGENPRDSVSITRIVNKQHFSRLKSLLTD PSVESCVVYGGFVDEEHLFIEPTILVDPPLDSPIMTEEIFGPLLPIITVEKIEDSINFINARPKPLAIYGFTKNKSFSKRLLSETSSGSLVFNDAVIQYA ADSLPFGGIGGSGIGKYHGKFSFETFSHYKAVARRSYLTDFWFRFPPWNHHKLLLFEASYHLDYLRLVLVILGLRKSRYGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031280 [exp]	0	1
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10001279 [exp]	10.7	0.9961
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	15.4	0.9953
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	16.7	0.9826
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10004324 [exp]	17.5	0.9784
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10013573 [exp]	18.7	0.9911
AT1G06260			Cysteine proteinases superfami...		Lus10002184 [exp]	18.8	0.9952
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	21.9	0.9952
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10037466 [exp]	22.4	0.9668
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015842 [exp]	22.7	0.9609
					Lus10003843 [exp]	24.5	0.9952

Compare expression of checked genes

Lus10031280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.