Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37060 617 / 0 ATCHX24 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) AT5G58460 568 / 0 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1) AT2G13620 393 / 3e-124 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G06970 318 / 6e-96 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 284 / 3e-83 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT3G44900 275 / 3e-80 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 275 / 4e-80 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G53720 272 / 8e-79 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G31910 272 / 8e-79 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G05580 271 / 3e-78 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031852 [exp] 1274 / 0 AT5G37060 605 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10042254 [exp] 1119 / 0 AT5G37060 659 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10026398 [exp] 1111 / 0 AT5G37060 649 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10030013 [exp] 379 / 2e-118 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 377 / 2e-117 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10026408 [exp] 290 / 3e-85 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 280 / 6e-82 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10043128 [exp] 277 / 5e-81 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10013423 [exp] 271 / 8e-79 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G282800 [exp] 695 / 0 AT5G37060 604 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Potri.009G078000 [exp] 608 / 0 AT5G37060 677 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Potri.007G105200 [exp] 385 / 7e-121 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 370 / 2e-115 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 307 / 2e-92 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.019G123800 [exp] 302 / 2e-90 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 291 / 5e-86 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 290 / 1e-85 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.018G098300 [exp] 286 / 2e-84 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.007G111400 [exp] 285 / 2e-83 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10031283 pacid=23150976 polypeptide=Lus10031283 locus=Lus10031283.g ID=Lus10031283.BGIv1.0 annot-version=v1.0 ATGGGACCTCACGGGAAATGGCTGGACCACCAGTATTATTCCGACCACAGTTTCCGAGCCCTGAACGAGCTGGTGGTTCTTTCTCGTGCTGGTACCGCTG CCTCGACCAATTCCTCGAAACCTGTTGTTCCGCAAATCCCGATAATATGTCACAAGACCGGCTCGATGCTCCATGGGAATATGATCTTCTACGCAGAGGA TATAATGCACTTCCCATTTAAACTCATACTTCTTCAGGTGGTTATGATCATAATCATCACAAGGATTGTGAGATTTGTCCTTAAACCTCTCAGTCAACCT AAGGTTGTTTCTGAAATCATTGCTGGAATAATCATGGGACCATCGGGTCTAGGACGAATCAAGTGGTTCTCGGGGATTTTCATGCCGACGACGGTTCAAT TTGTGCTAAAAAACCTAGGGCTCATGGGCTTCATGTTCTTCCTTTTCCTGAGTGGAGTGAAGATGGACCTCTCGGTCATTAAAAGATCAGAGAAGAAAGA CTGGCTTGTCACGATAATAGGGATGACAATCCCTATTGTACTACTTACCATAGTGGCGATCTCCGTACGTCCGTCGATGGATCCCGAGCTTGCTAAGGTA TCCTCCATTGGTGCGATCATCGGATTGCTGTCTCTCTCAGCTTTCTACGTCATCCATCCGATCCTCCAAGAGATGAACCTACTGAGCTCGGAGGTAGGGC GCATAGCCCTCTCCACATCGATAATTGTGGACATGTTCGGGCTCTTTTTCATGATCATTTTCGAGGTGTTGCGACACGCTGAGTACAGCTATCACGCCGC GATATGGTACAACATATCAGTGCTTGTCCTGGTCCTATTCATGAGCATCACCGTGCGAACTGGGGTGAGGTGGATCATCAACAACCATCCGATCGGGACA CCAATCGAACAAATGTATGTAGTATGGTTGCTGCTTGGCTCCATGGTGGTAGGGTTTCTGAGTGACATGTTTGGGATCGGAATAGCTAATGGTTCCTTCT GGCTAGGGCTCGTGATCCCTGACGGTCCACCGTTGGGTTCGACCATTGTGGAGAAGAGTGAGACCTTCATAATGCACCTCTTCATGCCCTTCTCTTACAT CTTTCTTGGGATGCTGGTGGATGTGTTTTCTATGTTCAGCGTCCCATGGTCGACCCTTTCGCCGCTTTTCGCCATTGCTATGACCGGTTTTGTGGGGAGG ATCTTCGCGAACATCATCGCTTCTCTGGTGCTCGAGATGTCGATTAAAGAGCGGATCAGTTTGAGCCTCATGCTTAGCTTGAGAGGCCAAATGGAGTTCA TCATCATGGTGCATTGGCTAGACAAAGGGATAATAGGAGTTCCATCATTCACGATGCTAGTGCTGATGACGGTGGCCGCGACATTCATCGTGACCCCAAT TTTTCGAGCCCTCTACGACCCATCGAGGCCGTACATGATAAGCAAATGGAGGACCATCCAGCATCACCCTCCGAACACAGACCTAAAGCTCCTCCTTTGT GTCAACGACCACGAAACCCTAGCCGGACTTGTGAACCTCCTAGAGTTCACTTTCCCGACCCAGTCAAGCCCGTTCACCATCTATGGGCTCCACATCATCG AAATGATCGGTCGTGCTGCCCCGATATTTGTGGACCACGAACACCAACGCCTCACGACCAAATACGCGAGCTCAATGTCCATCCACAACTCCCTCAAGTT CTACCAAGAATCTAAAGAGGCCAACCTGGTCCAGCTCCACTCGTTCACGGCCGTGGTCCCCAAAAGGACCATGTACCAGGACGTGTGCGAGCTGGCCCTA ACCAAGAAGGCCACCTTAATAATCATCCCTTTCCACAGGATGTGGACCGGGCCCATCCCGGACCCGCGATCCCAAACCCTAACCACGACTGCCCTGACCA AAACCCTAGACCACGCGCCGTGCTCAATCGCGGTGCTGGTCCAGAAGGGCGAGTTCCAGAACCCGATGTTTGCAGTCTCAGACGCTTACACCACCCACCC TTTCATCGTGATCTTCATGGGCGGGTCCGACGCTAGGGAGGCCTTGTCCTACGCGGACCGGATGATGGCGAACCCTGACGTGACCATAACTGTGATCCGG TTCCTCGTGGTGAACGGTCGCGGGGATGACGAGATGGAGAGGAAGCTCGACGAAGGGGTGCTCCAGTGGTTCATGGCTAGGAACGAGAGCACGAACCGAA TCACGTATCGAGAGATCGAGGTGAACAACGGGGAGGAGACATTGGCCTCCATCAATGCCCTCAAGAATGTGATGAACTATGAGGTGTGGATATTGGGGAG GGAGATTGGGATCAATCCTGTGTTGTTGGAAGGTTTGACTGGTTGGAGCAATCATGAAGAATTGGGAGTGATTGGAGACTATGTGTCTTCTAGTGATTTT GGGACTCAATCATCTGTGTTAGTTGTACAACAACAAATCCTAAGGGGGAAGAAACCTAAAAGGCCTAGACTTAGAAGCTTCTCTCTTAACAATTACTTTT AG
AA sequence Show only first row Show all	>Lus10031283 pacid=23150976 polypeptide=Lus10031283 locus=Lus10031283.g ID=Lus10031283.BGIv1.0 annot-version=v1.0 MGPHGKWLDHQYYSDHSFRALNELVVLSRAGTAASTNSSKPVVPQIPIICHKTGSMLHGNMIFYAEDIMHFPFKLILLQVVMIIIITRIVRFVLKPLSQP KVVSEIIAGIIMGPSGLGRIKWFSGIFMPTTVQFVLKNLGLMGFMFFLFLSGVKMDLSVIKRSEKKDWLVTIIGMTIPIVLLTIVAISVRPSMDPELAKV SSIGAIIGLLSLSAFYVIHPILQEMNLLSSEVGRIALSTSIIVDMFGLFFMIIFEVLRHAEYSYHAAIWYNISVLVLVLFMSITVRTGVRWIINNHPIGT PIEQMYVVWLLLGSMVVGFLSDMFGIGIANGSFWLGLVIPDGPPLGSTIVEKSETFIMHLFMPFSYIFLGMLVDVFSMFSVPWSTLSPLFAIAMTGFVGR IFANIIASLVLEMSIKERISLSLMLSLRGQMEFIIMVHWLDKGIIGVPSFTMLVLMTVAATFIVTPIFRALYDPSRPYMISKWRTIQHHPPNTDLKLLLC VNDHETLAGLVNLLEFTFPTQSSPFTIYGLHIIEMIGRAAPIFVDHEHQRLTTKYASSMSIHNSLKFYQESKEANLVQLHSFTAVVPKRTMYQDVCELAL TKKATLIIIPFHRMWTGPIPDPRSQTLTTTALTKTLDHAPCSIAVLVQKGEFQNPMFAVSDAYTTHPFIVIFMGGSDAREALSYADRMMANPDVTITVIR FLVVNGRGDDEMERKLDEGVLQWFMARNESTNRITYREIEVNNGEETLASINALKNVMNYEVWILGREIGINPVLLEGLTGWSNHEELGVIGDYVSSSDF GTQSSVLVVQQQILRGKKPKRPRLRSFSLNNYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031283 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	5.5	0.8862
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	6.0	0.9055
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	6.0	0.8836
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	8.6	0.9027
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10039263 [exp]	9.9	0.8803
AT3G03430			Calcium-binding EF-hand family...		Lus10033587 [exp]	10.4	0.8917
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	10.5	0.8998
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	12.2	0.8806
AT5G45840			Leucine-rich repeat protein ki...		Lus10015277 [exp]	14.5	0.8831
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	17.2	0.8825

Compare expression of checked genes

Lus10031283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.