Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07010 467 / 1e-164 AtSLP1 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) AT1G18480 206 / 2e-62 AtSLP2 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT1G69960 42 / 0.0006 PP2A serine/threonine protein phosphatase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031854 [exp] 429 / 2e-151 AT1G07010 290 / 3e-97 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10014985 [exp] 179 / 4e-52 AT1G18480 492 / 1e-174 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10038865 [exp] 179 / 5e-52 AT1G18480 496 / 5e-176 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10031853 [exp] 154 / 4e-46 AT1G07010 87 / 7e-22 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077900 [exp] 515 / 0 AT1G07010 538 / 0.0 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Potri.013G127500 [exp] 197 / 4e-59 AT1G18480 538 / 0.0 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10031284 pacid=23151137 polypeptide=Lus10031284 locus=Lus10031284.g ID=Lus10031284.BGIv1.0 annot-version=v1.0 ATGGCGATTCCCTTGTTCAGAATTGCGATTCCTCACCAGTCCAATCTCCCTAATGCATCACCATGCACCAGAAAAGACAAGCTCCGAACTCCTTGCGCTT CATCCGAGCTCAACGCCGTCTCCAGTGCAGAAGTCCTCAGAGCTTGCGACGTTGGAGATTTGCAGCCGATAGTGGTGACCGGAGATCCTCCCACTTTCGT TTCTGCTCCTGGTCGTCGTATCGTCGCTGTTGGGGATTTACATGGAGACCTTGATCAAACGAGATCCGCTCTTCGGATAGCCGGGGTACTAAGTAGTAGT GACAGTGGCTGGGATCGATGGACTGGTGGCCAAACGGTTTTGGTGCAGCTTGGGGATGTGTTGGATAGAGGTGGAGGTGAGATAGCCATACTGTCCTTGC TGCGTTCGTTGGATGTTCAAGCAAGGCTACAAGGTGGAGCTGTTTTCCAGATCAATGGTAATCATGAGACGATGAACGTGGAAGGAGACTTCCGGTACGT TGATTCGACTGGATTCGACGAGTGTCTTGATTTCCTGGCCTACTTGGAAGATGGTTTCGAGGATGATTGGGAGAGACGTTTCGTTGGCTGGGTTGGAGCA TCAGACAAGAGAAGAAAAGAGCAGAACACATCACGTAATCGCTGGGATCCATGGAACTTAGTGAAGAGGCAAAAGGGAATTGTTGCTAGATCAACCCTGT TGAGGCCCGGTGGAGCACTAGCGTGTGAACTGGCAAAGCATGGTGTTCTGTTGAAGATCAATGACTGGGTTTTTTGCCATGGAGGCATTCTTCCTCACCA TGTTGCACACGGTGTAGAGAGAATGAATAGGGAAGTGTCTCAGTGGATGAAAGGCCTTGGAAACGGTGACGATCAAAGTCCGAACACTCGTTTCCTCGCG ACACGAGGGTACGACAGTGTCGTCTGGAATCGGTTGTACTCACAGGATCTCTCTGCTCTAGGGGACCACCAAATTAATCAGATAGAAGCGGCTCTATATG ACACTTTAGGATCACTTGATGCAAAGGGAATGGTGGTTGGACATACCCCTCAACCTAGAGGAGCAAACTGCGAATGTAATGGCCGCATATGGAGAGTTGA TGTGGGGATGTCTAAAGGAGTGTTCAATTCAAGGCCTGAGGTTCTCGAAATCAATGAGAGCAAGACGAGAGTCTTGAGATTGGGAAGGGATACCATTGAT GAATCTGAAGCTGTCAGGTATTTGTGA
AA sequence Show only first row Show all	>Lus10031284 pacid=23151137 polypeptide=Lus10031284 locus=Lus10031284.g ID=Lus10031284.BGIv1.0 annot-version=v1.0 MAIPLFRIAIPHQSNLPNASPCTRKDKLRTPCASSELNAVSSAEVLRACDVGDLQPIVVTGDPPTFVSAPGRRIVAVGDLHGDLDQTRSALRIAGVLSSS DSGWDRWTGGQTVLVQLGDVLDRGGGEIAILSLLRSLDVQARLQGGAVFQINGNHETMNVEGDFRYVDSTGFDECLDFLAYLEDGFEDDWERRFVGWVGA SDKRRKEQNTSRNRWDPWNLVKRQKGIVARSTLLRPGGALACELAKHGVLLKINDWVFCHGGILPHHVAHGVERMNREVSQWMKGLGNGDDQSPNTRFLA TRGYDSVVWNRLYSQDLSALGDHQINQIEAALYDTLGSLDAKGMVVGHTPQPRGANCECNGRIWRVDVGMSKGVFNSRPEVLEINESKTRVLRLGRDTID ESEAVRYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	0	1
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10002563 [exp]	1.0	0.9605
AT4G02920			unknown protein		Lus10029640 [exp]	2.8	0.9566
AT1G64680			unknown protein		Lus10001667 [exp]	3.5	0.9522
AT2G27290			Protein of unknown function (D...		Lus10013320 [exp]	5.2	0.9325
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	5.5	0.9442
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10003328 [exp]	6.3	0.9444
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10009359 [exp]	7.1	0.9245
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10027363 [exp]	7.9	0.9146
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10018163 [exp]	8.8	0.9387
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	10.2	0.9368

Compare expression of checked genes

Lus10031284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.