Plant FIBer expression Database

Lus10031286 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07060 135 / 2e-39 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031856
[exp]
363 / 1e-127 AT1G07060 133 / 3e-37 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G281500
[exp]
176 / 3e-55 AT1G07060 146 / 2e-43 unknown protein
PFAM info
Representative CDS sequence
>Lus10031286 pacid=23151076 polypeptide=Lus10031286 locus=Lus10031286.g ID=Lus10031286.BGIv1.0 annot-version=v1.0
ATGGCGTCAATGAGGAAAGGTGGACCGTCTGGAGAAGACGGAACTGATCAACTCATTCGCCTATTCCGCTCCCAAATCATAGGCAGAAGACCTCACTCTA
AGTTCCAATTCCGCAGATTCGACGAAGAATCCCTGAGAATTCTCGAATCGATTATGGCCTGCAAAGATAGGAAGACTATCACGGAAACGCGAACGAGCTT
GAGAGACTTCATGAGATCCGAATCTCTCGCAGCTATTCGCGAGCTCTCACAGCTCACAGTTGAGCGGAAGCTTTTGACCGTTGAATTCTTTATTCGCTCT
TTCACTCTTATGGGAGACATCGAGAGTGTCTTGGCTCTCAACTACGAGGGATTGTTGATGCGGGAACTGAAATCCGGCACACATCAGTGGATGCGAGTCT
CGTACGAGGAATGGCTGAGTTTTGCTCAGCACTCGTTTGATTACGGATACCACGCAGTTGCTATACAGGCATGTGACAAAGCCCTGATATGCCTTAACAA
TGACGACAACGACGATGCCAGAACCAGCGAACCTATCAAACGTGCAGAAGAAGTTGACAAAGTTAAGAAGCTGAAAGACTCCGCTCTTAGGTTTGGAGCT
TCAAATTCTGGTACGTAG
AA sequence
>Lus10031286 pacid=23151076 polypeptide=Lus10031286 locus=Lus10031286.g ID=Lus10031286.BGIv1.0 annot-version=v1.0
MASMRKGGPSGEDGTDQLIRLFRSQIIGRRPHSKFQFRRFDEESLRILESIMACKDRKTITETRTSLRDFMRSESLAAIRELSQLTVERKLLTVEFFIRS
FTLMGDIESVLALNYEGLLMRELKSGTHQWMRVSYEEWLSFAQHSFDYGYHAVAIQACDKALICLNNDDNDDARTSEPIKRAEEVDKVKKLKDSALRFGA
SNSGT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G07060 unknown protein Lus10031286
[exp]
0 1
AT5G27000 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABID... Lus10015212
[exp]
12.3 0.8256
AT2G21300 ATP binding microtubule motor ... Lus10031086
[exp]
19.0 0.8256
AT3G48770 DNA binding;ATP binding (.1) Lus10004567
[exp]
19.4 0.7994
AT1G29200 O-fucosyltransferase family pr... Lus10029239
[exp]
20.4 0.8154
AT1G55620 CLCF, ATCLC-F, ... chloride channel F (.1.2) Lus10032888
[exp]
24.9 0.7912
AT2G02040 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDO... Lus10040099
[exp]
25.8 0.7847
AT1G59610 DRP2B, CF1, ADL... Dynamin related protein 2B, dy... Lus10007434
[exp]
33.2 0.7664
AT1G02030 C2H2ZnF C2H2-like zinc finger protein ... Lus10021637
[exp]
39.9 0.7902
AT1G29200 O-fucosyltransferase family pr... Lus10007290
[exp]
44.0 0.7865
AT1G09910 Rhamnogalacturonate lyase fami... Lus10000684
[exp]
44.9 0.7796

Lus10031286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.