Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58510 1120 / 0 unknown protein AT5G55060 154 / 2e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031857 [exp] 691 / 0 AT5G58510 468 / 2e-158 unknown protein Lus10031851 [exp] 199 / 2e-58 AT5G58510 109 / 2e-27 unknown protein Lus10020371 [exp] 152 / 3e-40 AT4G26680 241 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10043118 [exp] 150 / 6e-38 AT5G55060 630 / 0.0 unknown protein Lus10040061 [exp] 148 / 9e-37 AT5G55060 753 / 0.0 unknown protein Lus10032631 [exp] 146 / 2e-36 AT5G55060 643 / 0.0 unknown protein Lus10000118 [exp] 123 / 3e-31 AT5G55060 319 / 1e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G076000 [exp] 1284 / 0 AT5G58510 1237 / 0.0 unknown protein Potri.001G280832 [exp] 171 / 9e-49 AT5G58510 164 / 3e-47 unknown protein Potri.011G089300 [exp] 144 / 2e-35 AT5G55060 770 / 0.0 unknown protein Potri.001G280900 [exp] 117 / 1e-30 AT5G58510 79 / 5e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031287 pacid=23151028 polypeptide=Lus10031287 locus=Lus10031287.g ID=Lus10031287.BGIv1.0 annot-version=v1.0 ATGGCGTCTGTCAGCAAAGCGGATCCGTCTTTAGAAGACGGAGTTGAGGAAGAGGAGCTTGAACGATTCAATGATTTTACTATTGCGTCTTCATGGGAGA GGTTTATATCAGAAATAGAAGCAGTTTGTCGTCAGTGGATAGCTGATGGTCCAAAGAATTTGTTGGAAAAGGGTGCAACTCAGTTGGAGACTTCACAGAA CTTATATACAGTCAAAATGGAGTTGAAGTATGCAATGAAAAGTTATTTCATGGAGTATTTTTTTGAAACCAAATCTGAAGCTAAATTTTCAGAGTGGACT TCTCCAGTGCATGATTTGCAGTTATGCTTTGGAGTACATGAATTTTTGGTGATTGCTCCTCAAAGTGCCAGCGGTGTGGTGCTTGATGCCCCTGAGGCTT CCAAGCTTCTAAGTGCTGTTGCAATTGCTTTGACAAATTGTTGCAGCTCGTTGGCAGCATTTGTCCCGGTGCATGATCCTTCTCGGAAAGCTTTTATTGG AATTCAAAACATGGGAACTGTTTTCACTAGAAGATTTGAAGCAGACCGCATCGGTAGCCAACTTCCTCTGAAGCTCTTGCATCTGGAAGGACTCTTTGCT CAAGGTTTGGATACACAAGATAAAGATGATAAGGAAAGTCCCCATGGTGATGGGCATAACAGAGCTCAGTGGGATGATGATTGTCCATGGAGCGAGTGGT ATTCAGCAGAGGATCCAATAAGGGGAATTGAACTAATCGCTACATGGTCTGAAAGAATGGTGGAGAACTCTTTAGAGATGGCTGAACTGGAAAATACATC ACCTCATGATGCTGAGAAGTGGGTCATACTTCCAATTATCTCCCCAAATCTAGATAGTTCAGGTGGAAATAGGATTGGATTTACCTCCCAATTAGTTCTT CTGATCGATGCATTGGATATTTCCTTTAAAGCCCAATTCATTGAGGACTTTGTCTCAGCCGACAACTCTGGCCCTGATAAACTCATTTCTTCAATGGTGG TGCCCCCACCAACAGTTCTTGATCGGGTGTTGAAGGATCTGTTTCAGGGATCTCCAATCCAAAGTTCTGCTAAGTTGGAGCATAAATGCTCCCGGGCTAT TAAAGGTGCACCAGTTGGTTCTCTTTTTGCCCAGTTTTGCTTACATTGTCTGTGGGTGGGGAACTGCAATATGCGTGCGATCTCTGTCCTTTGGATAGAG TTCATTCGAGAAGTTCGGTGGTGTTGGGAAGAATCACAGCCTTTGCCTAAAGTTCAAGTAAATGGTTCAATTGACCTGGCAACCTGTCTGATAAATCAGA AATTGCAAATGCTTGCCATTTGCATTGAGAGGAGGGGCGACTTAAACGATGATTTCCAAGACTGTGAGGGAAGCAATGATCAAACCGATACTCATAAGAA GGAAGATGGTCAACTAAGGAATGATGCAGCTATCTCAAAGGTATCCGGTGTACAGTCCGACAGAAGTCATGACAGCCCATCAGCACCTGACGGTTCGTTT AGACATGAAACAAAGGCTTCAAGTTCTCGTGTAAAGCCGGATCTAAAGTCTCCAGACAGTTTGAGGAGAGGTTCAGCTGGTGTGGTGAATTCCATGATGC TTCTGAAGTCGCATCAGAGCATGCATGCACCTTACACGCAGGACCCACCACTGATGACAGAGGACATGCATGAAGAACGCCTGCAGGCTGTTGAAGCATT TGGTGATTCATTCAACTTTTCTGCTCAGTTAGAGAGAGATGTTTTAGCATCAGACATGTCAGCATTCAAAGCAGCAAATCCAGATGCTGTTTTCGAGGAT TTTATCCGGTGGCACTCACCTGGAGATTGGATAGACGATGAGATTAATGACAAGGCAGCATCCGGACGTTCAAGCTCGAAAGACGACTGGCCTCCTCGAG GTAGACTTTCGCAAAGAATGTCTGATCAGGGAAATTTGTGGAGACAGATTTGGAACGATGCTCCGGCTTCGCCAGCTTATGATCAGAAACCACTTCTGGA CCCAAATCGAGAAGGAGAGAAGATACTTCATTACCTGGAGACGCTGCAGCCTCATCAACTGCTGGAGCAAATGGTCTGTACTGCTTTTAAAGCAGCGGCA GACACACTAAACCTGACCAGTTATGGAGGCATGAATCAGATGACAACGAAAATAGAGCAACTTTACCGGACCATGGCATCTGCATTGAAGCTCTTACAAA GTAATAGTATATCCTATGGCAGTGAGGCTATTGAAGACTTAAAGAGGATATGTGTAGTGTTCGAACACATCGAGAAGTTACTTTCTCTTGCTGCTTCTCT CCATCGCAAGTTCTTGGACGCACCTCGTCTCTCTCAAGCAATTTTCTCAGACTACCACAGCTTTTACCTTCCGAAAATGGCGACTGGGACCCGGTCGAAG TCGGATGATGCCAAGCACCAGGAGTTCGACAAGAAGCAACAAGTGGGGGAGAAGGAAAGGGATGTGGTGTCGAATCTGTTCAAGCAGCCGACGGCGAACC AGAAGTGGAGGAAAGTGATAAGCATGGGTAATCTCCTCAACGGCCACGAGCCGACGGTGAGGGAGATCATATTCACAACGCATGGGACTGGGAATGCTAA TGACGGTAAGAGCTTGGAAGGTGAAATGGAGACTTATCGGATGTACATAGCCGGAACTTCGAATGATCTCCGTGTAGCCCTTTCAGTGACTTCCTGTGAC TAG
AA sequence Show only first row Show all	>Lus10031287 pacid=23151028 polypeptide=Lus10031287 locus=Lus10031287.g ID=Lus10031287.BGIv1.0 annot-version=v1.0 MASVSKADPSLEDGVEEEELERFNDFTIASSWERFISEIEAVCRQWIADGPKNLLEKGATQLETSQNLYTVKMELKYAMKSYFMEYFFETKSEAKFSEWT SPVHDLQLCFGVHEFLVIAPQSASGVVLDAPEASKLLSAVAIALTNCCSSLAAFVPVHDPSRKAFIGIQNMGTVFTRRFEADRIGSQLPLKLLHLEGLFA QGLDTQDKDDKESPHGDGHNRAQWDDDCPWSEWYSAEDPIRGIELIATWSERMVENSLEMAELENTSPHDAEKWVILPIISPNLDSSGGNRIGFTSQLVL LIDALDISFKAQFIEDFVSADNSGPDKLISSMVVPPPTVLDRVLKDLFQGSPIQSSAKLEHKCSRAIKGAPVGSLFAQFCLHCLWVGNCNMRAISVLWIE FIREVRWCWEESQPLPKVQVNGSIDLATCLINQKLQMLAICIERRGDLNDDFQDCEGSNDQTDTHKKEDGQLRNDAAISKVSGVQSDRSHDSPSAPDGSF RHETKASSSRVKPDLKSPDSLRRGSAGVVNSMMLLKSHQSMHAPYTQDPPLMTEDMHEERLQAVEAFGDSFNFSAQLERDVLASDMSAFKAANPDAVFED FIRWHSPGDWIDDEINDKAASGRSSSKDDWPPRGRLSQRMSDQGNLWRQIWNDAPASPAYDQKPLLDPNREGEKILHYLETLQPHQLLEQMVCTAFKAAA DTLNLTSYGGMNQMTTKIEQLYRTMASALKLLQSNSISYGSEAIEDLKRICVVFEHIEKLLSLAASLHRKFLDAPRLSQAIFSDYHSFYLPKMATGTRSK SDDAKHQEFDKKQQVGEKERDVVSNLFKQPTANQKWRKVISMGNLLNGHEPTVREIIFTTHGTGNANDGKSLEGEMETYRMYIAGTSNDLRVALSVTSCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58510			unknown protein		Lus10031287 [exp]	0	1
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	3.9	0.8890
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10033864 [exp]	4.9	0.9093
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	4.9	0.8893
AT2G16405			Transducin/WD40 repeat-like su...		Lus10017483 [exp]	5.9	0.8819
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	6.0	0.9152
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009007 [exp]	7.2	0.8489
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	13.4	0.8990
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10041808 [exp]	14.0	0.8456
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10011919 [exp]	14.2	0.8419
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10042575 [exp]	19.6	0.7979

Compare expression of checked genes

Lus10031287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.