Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58560 314 / 9e-107 FOLK farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) AT5G04490 167 / 2e-49 VTE5 vitamin E pathway gene 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031858 [exp] 451 / 5e-162 AT5G58560 341 / 1e-118 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Lus10017447 [exp] 182 / 5e-55 AT5G04490 330 / 3e-113 vitamin E pathway gene 5 (.1) Lus10028835 [exp] 147 / 1e-41 AT5G04490 280 / 1e-93 vitamin E pathway gene 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G074800 [exp] 393 / 5e-138 AT5G58560 354 / 8e-123 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.009G074700 [exp] 376 / 2e-132 AT5G58560 332 / 3e-115 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.001G279900 [exp] 365 / 4e-128 AT5G58560 333 / 8e-116 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.010G232600 [exp] 183 / 9e-56 AT5G04490 320 / 2e-109 vitamin E pathway gene 5 (.1) Potri.008G029000 [exp] 47 / 2e-06 AT5G04490 117 / 7e-33 vitamin E pathway gene 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0234 [flax] [poplar] CTPT PF01148 [flax] [poplar] CTP_transf_1 Cytidylyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10031288 pacid=23150940 polypeptide=Lus10031288 locus=Lus10031288.g ID=Lus10031288.BGIv1.0 annot-version=v1.0 ATGGTTGGATTCGGGAGCAGATTATTCAAGCAGCGCGGTCCTCAGAAGTCAGCTGTGGCGGCGACGGCGGCGATGATGGTCCACCAGGATCCGATCGTAT CGGACGCCATAGCGACGGGGTTGTCCGGAGTTGTCGCGCTGTCTGTTCTCCGGCTGTGGGAAGAAACCGCCAAGCGCGGCGTCTTCGATCAGCCAGAACC GCAAAGGTGGCATTTTTGGTCCTCCCCACTTCCCAGGATGTTGGTCTCGAGCCCAGTAGCCTCTGATCTTTTGGCGACGGTTGTGTTGGCAGTTGTCGTA TTTGGTTTCCTGGAGCTGTGGAAGGAAACTGCCAAGCGAGGACTTGAACAGAAAGTGAACAGGAAGCTTGTGCACATAAGTATTGGGCTAGTTTTCATGC TTTGCTGGCCAATGTTCAGTTCTGGAAATCGGGGGGCCATCATGGCAGCTCTTATTTCCGGGGCCCACATTATAAAAATGTTTCTTATTGGATCTGGCAT GTGGAAAGATGAAGCCACCGTTAAATCAATGAGCAGATTCGGTGATCGCAGGGAACTACTCAAAGGCCCGCTCTACTATGCTGCAGCAATCACGCTGGCT TGTGCAATCGGTTGGAGGACTTCTCCTGTCGCCATTGCAGCAATATGCAATCTCTGTGCTGGAGACGGCATGGCAGACATAGTGGGAAGGCGATTTGGCG AACAGAAACTCAGTTACAACCGCAACAAGTCGATAGCAGGGAGCGTCGCCATGGCATCGGCTGGCTTCATAGCATCTCTTGGGTATATGCATTATTTCGC GTCGTTCGGGTATGTCCAGGAGAGCTGGGGGATGGTGTTGGGCTTCCTAATTGCCTCCCTTGCGTCGGCGTTTGTCGAATCGCTTCCGATAAGTACGGAA CTCGATGACAACCTTACTGTCACCCTCACTTCTTTCTTGGTAGGCAAGCTCGTCTTCCGATGTTGA
AA sequence Show only first row Show all	>Lus10031288 pacid=23150940 polypeptide=Lus10031288 locus=Lus10031288.g ID=Lus10031288.BGIv1.0 annot-version=v1.0 MVGFGSRLFKQRGPQKSAVAATAAMMVHQDPIVSDAIATGLSGVVALSVLRLWEETAKRGVFDQPEPQRWHFWSSPLPRMLVSSPVASDLLATVVLAVVV FGFLELWKETAKRGLEQKVNRKLVHISIGLVFMLCWPMFSSGNRGAIMAALISGAHIIKMFLIGSGMWKDEATVKSMSRFGDRRELLKGPLYYAAAITLA CAIGWRTSPVAIAAICNLCAGDGMADIVGRRFGEQKLSYNRNKSIAGSVAMASAGFIASLGYMHYFASFGYVQESWGMVLGFLIASLASAFVESLPISTE LDDNLTVTLTSFLVGKLVFRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Lus10031288 [exp]	0	1
AT2G43945			unknown protein		Lus10026850 [exp]	2.6	0.7638
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10003504 [exp]	3.5	0.7319
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10027781 [exp]	15.1	0.7509
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	26.1	0.7139
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10029536 [exp]	27.9	0.7490
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039162 [exp]	34.9	0.7078
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	38.7	0.7080
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10022500 [exp]	64.9	0.6989
AT2G22730			Major facilitator superfamily ...		Lus10019244 [exp]	73.6	0.7019
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10008048 [exp]	90.3	0.6691

Compare expression of checked genes

Lus10031288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.