Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51770 1041 / 0 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT5G58550 949 / 0 EOL2 ETO1-like 2 (.1.2) AT4G02680 714 / 0 EOL1 ETO1-like 1 (.1) AT3G04240 54 / 6e-07 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031859 [exp] 1730 / 0 AT3G51770 1088 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022660 [exp] 922 / 0 AT3G51770 1231 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012238 [exp] 845 / 0 AT3G51770 1092 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10002206 [exp] 843 / 0 AT3G51770 1089 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022084 [exp] 745 / 0 AT4G02680 1267 / 0.0 ETO1-like 1 (.1) Lus10012472 [exp] 131 / 2e-34 AT3G51770 230 / 2e-70 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012510 [exp] 164 / 5e-28 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010040 [exp] 99 / 3e-24 AT3G51770 165 / 3e-48 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010041 [exp] 63 / 8e-12 AT3G51770 76 / 3e-17 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280100 [exp] 1182 / 0 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.009G075300 [exp] 1179 / 0 AT3G51770 1206 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.016G123800 [exp] 1034 / 0 AT3G51770 1415 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.006G103400 [exp] 1010 / 0 AT3G51770 1399 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.005G214400 [exp] 755 / 0 AT4G02680 1264 / 0.0 ETO1-like 1 (.1) Potri.002G048300 [exp] 754 / 0 AT4G02680 1293 / 0.0 ETO1-like 1 (.1) Potri.019G025600 [exp] 50 / 1e-05 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 48 / 3e-05 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10031289 pacid=23151175 polypeptide=Lus10031289 locus=Lus10031289.g ID=Lus10031289.BGIv1.0 annot-version=v1.0 ATGGCGGATGAGAATCCAAAGCTGCAGTTTCCGCCACGATCAACTCCTTCTCTCAATCGCCACCTTACCATCGTTTCGCACCAGCCAAACACCGAAATCC CCCGAACTCCATCAGCCGGAAAAAAAATGGGGAAACTCAGATCCCTTAAGGTATTGGAGAAGATAAAGGCCGCTCAGGTTCACCATGCCTTCATCACTAC TCCGCCGGAAACTCCTTACAGAGGAGGGAAACCACCACCACAACAGCCGTCTTCTTCTTCCTCCTCTGCCGCCTCTTCTTCGTCGTCGAAATCTGAAGCT GCTCGTATATTGCTTCCGTATGGCCTCCCGACGACAGACCTAATAGAGCCGAGAATCGATCCCTGGTTGAAGCCCGTGGACTCCGCCGATTCATTATCCG ACCTCTATCGTCGCTTCTCTGCTACTAGTGATTCCGCTTCGCATCTTCTTCTTCTTATGGAGCAGTACTCAATCTCACTTTCAATGGCGGATCCTAAGCT CCCTCGGAAGTGCCTCTCCGCAGCTAGGAAGCACGCTGTGGATGTCTACTCGAAAGTGATTCTTTCTTCCTGGTTGAGATTCGACAAGAGAGAAGACCAG CTCACCGCAGTCTCCCCCATGGATTGTTCTGGAGGTAATTTGCTAGAGTGTCCGAATTCCGCTTTGATTTCTGGTTTGAATTCCGTCAATCATGATGATG ATCTCTGCCAATGCGGCTCAAATATAGAAGAAAATGAACAAAGTGAATGGTTAGTTTCTGCTAGTGTTACCACCACCATTGCCATCGAGGACCGTATATT CTTTTGCATTAATGGAGATTCAGTACTCTGCAGTAGATCCAGGATTGCTAGTTTGTCTGCTCCATTAAAGGCCATGTTGTACGGAGGATTCCTCGAATCA AGGACGAGGAAGATTGATTTATCCAACACCGGCATTTCGCTCCAAGGAATGAAAGCTGTAGAGACTTACAGCAGGATCAACAGGTTCGAATTCGAATTCG AATCTGCTACTACTCCGGATATAGTTCTCGAGGTCCTCTCCTTTGCGAGCAGATTCTGCTGCGAGGAGATGAAATCGGCTTGCGATTCTCATCTGGCTTC TTTAGTTCATAGGATTGAAGATGCAGTAATCCTGATCGATTACGGATTGGAACTCAGGTCAACTCTACTCGTTGCCTCTTGTTTACAGGTAATGTTACGA CACTTGCCCGATTCGCTCTTGAAAAACCGTAGAATGCTTCGAGTTCTCTGCGGATCTAGAGCTAGGGAGAGACTATCCATCTTAGGACATCCTGCAGCTT TCTTGCTTTACTATTTCCTCGCGCAAGTCGCTCTCCAAGAAAGAAAGTCGTCCTCCTCAAACGTCACAGTCATGTTGTTAGAAGGAATGCTGGAGTTTGC TGTATCAAAATGGCAGAAGGCTCTGGCATTTCACCAGCTGGGATGCATAATGCTTGAGAGAAAGGAGTTTAATGATGCTCAGTGTTATTTCGAATCCGCA GCCGAATCTGGACATGTTTATTCTCTAGCTGGCGTCGCGAGGGCGAAATTCAAGCAAGGCCAGCAATACTCAGCCTTCAGGTTGATGAACTCCTTAGTCT TTGAACATAAACCTGTGGGATGGATGTATCAAGAGAGGTCTTTATACGTACTTGGCCGCGAAAAGATCTTGGATGTGAACACGGCTACTGCACTCGATCC GACTCTTTCGTTTCCTTACAAGTTTAGAGCAGTGAAGAAGGTGGAAGAGAAGAAGGATATTGCAGCAGGTGTATCAGAGATTGATAAGTTCATCGGGTTC AAGCTCGAGGCGGATTGCCTCGAGCTGCGTGCTTGGTTGTTCATCGCGCTTGAGGATTATGACCGAGCGTCCAGGGATCTACGAGCCTTGCTGACTCTGG AACCGAATTACATGATGTATAACGGGAAGATGTGCGCTAGTTATGTCGTGGAGCTGCTGAATTGCCGGCGGCTTTTCCAGCAGTGGAGCTTGGCTGATTG TTGGTTTCAGCTTCACGATCGATGGTCGAGTGTCGACGATATCGGTTCGTTGGCTATCATTCATCAGATGCTGGTGAATGATCCTACGAATAGCCTGCTG CGGTTTCGACAGTCTTTACTCCTACTCAGGTTGAATTCTCCAAAGGCTGCAATGAGCTGTTTACTTATGGCTCGAAATCACGCGACCTCGGAACACGAGA AGCTGATCTACGAAGGGTGGATTCTTTACGACATCGGTCATAGGGTCGAAGCACTTTCGAAAGCCGAGAAGTCCCTTCTGATCAAGAGATCGTTCGAAGC TTTTTTCCTGAAAGCTTACATATTGGCTGACACAAACTTAGATCCCTTATCTTCATCTCATGTCATCCAACTCTTGGAAGAAGCTCTCAAATGTCCTTCA GATTGTCTGAGGAAAGGGCAAGCATTGAACAACTTGGGAAGTATGTACGTGGACAGCGGGAAGCTAGATAAGGCTGCGGATTGCTACGCGAATGCTCTCA CCATTAAACACACTAGAGCTCATCAAGGACTGGCGCGAGTCTATCAACTGAGAAATCAGCGAAAGGCTGCGTACAATGAGATGACCGAGTTGGTAGAGAT GGCACATTGCAACGCATCGGCGTATGAAAAACGATCGGAGTATTGCGACCGGGAGATGGCCAAGGATGACCTGAATAAGGCCACCCAACTCGACCCGCTA AGAACATATCCTTACAGATTCAGAGCTGCTGTGCTAATGGACGACCAGAAGGAAACGGAAGCCGTGGAAGAGCTAAGCAGGGCTATAGCTTTCAAACCCG AGCTTCAAATGCTGCATCTTCGAGCAGCATTCTACGAATCAATGGGAGACACCGTCTCCGCCTTGCGGGACTGCGAGGCAGCTCTCTGCCTTGATCCAAC CCACATCGACACCCTCGATCTGTACAACCGGACTAAGGACAGAGCCAACCGGTAG
AA sequence Show only first row Show all	>Lus10031289 pacid=23151175 polypeptide=Lus10031289 locus=Lus10031289.g ID=Lus10031289.BGIv1.0 annot-version=v1.0 MADENPKLQFPPRSTPSLNRHLTIVSHQPNTEIPRTPSAGKKMGKLRSLKVLEKIKAAQVHHAFITTPPETPYRGGKPPPQQPSSSSSSAASSSSSKSEA ARILLPYGLPTTDLIEPRIDPWLKPVDSADSLSDLYRRFSATSDSASHLLLLMEQYSISLSMADPKLPRKCLSAARKHAVDVYSKVILSSWLRFDKREDQ LTAVSPMDCSGGNLLECPNSALISGLNSVNHDDDLCQCGSNIEENEQSEWLVSASVTTTIAIEDRIFFCINGDSVLCSRSRIASLSAPLKAMLYGGFLES RTRKIDLSNTGISLQGMKAVETYSRINRFEFEFESATTPDIVLEVLSFASRFCCEEMKSACDSHLASLVHRIEDAVILIDYGLELRSTLLVASCLQVMLR HLPDSLLKNRRMLRVLCGSRARERLSILGHPAAFLLYYFLAQVALQERKSSSSNVTVMLLEGMLEFAVSKWQKALAFHQLGCIMLERKEFNDAQCYFESA AESGHVYSLAGVARAKFKQGQQYSAFRLMNSLVFEHKPVGWMYQERSLYVLGREKILDVNTATALDPTLSFPYKFRAVKKVEEKKDIAAGVSEIDKFIGF KLEADCLELRAWLFIALEDYDRASRDLRALLTLEPNYMMYNGKMCASYVVELLNCRRLFQQWSLADCWFQLHDRWSSVDDIGSLAIIHQMLVNDPTNSLL RFRQSLLLLRLNSPKAAMSCLLMARNHATSEHEKLIYEGWILYDIGHRVEALSKAEKSLLIKRSFEAFFLKAYILADTNLDPLSSSHVIQLLEEALKCPS DCLRKGQALNNLGSMYVDSGKLDKAADCYANALTIKHTRAHQGLARVYQLRNQRKAAYNEMTELVEMAHCNASAYEKRSEYCDREMAKDDLNKATQLDPL RTYPYRFRAAVLMDDQKETEAVEELSRAIAFKPELQMLHLRAAFYESMGDTVSALRDCEAALCLDPTHIDTLDLYNRTKDRANR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	0	1
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	1.7	0.8809
AT5G58100			unknown protein		Lus10008552 [exp]	3.9	0.8211
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	5.5	0.8201
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10037354 [exp]	8.0	0.7997
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	8.8	0.8096
AT3G01380			transferases;sulfuric ester hy...		Lus10039444 [exp]	12.4	0.8119
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10029110 [exp]	13.9	0.8373
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031859 [exp]	14.4	0.8686
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10035778 [exp]	14.8	0.7496
AT1G69630			F-box/RNI-like superfamily pro...		Lus10037440 [exp]	15.9	0.7572

Compare expression of checked genes

Lus10031289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.