Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30105 444 / 1e-156 unknown protein AT5G07910 152 / 1e-43 Leucine-rich repeat (LRR) family protein (.1) AT4G26050 85 / 6e-18 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT3G11330 81 / 2e-16 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT2G17440 80 / 3e-16 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G15410 79 / 7e-16 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT3G26500 79 / 9e-16 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT5G05850 79 / 1e-15 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT1G12970 77 / 2e-15 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT4G35470 77 / 3e-15 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031861 [exp] 696 / 0 AT2G30105 437 / 7e-154 unknown protein Lus10021635 [exp] 174 / 3e-52 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10000681 [exp] 169 / 5e-50 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1) Lus10016684 [exp] 88 / 2e-18 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10035976 [exp] 86 / 4e-18 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10000900 [exp] 83 / 3e-17 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10017948 [exp] 79 / 8e-16 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10008712 [exp] 79 / 1e-15 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10013689 [exp] 77 / 4e-15 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280500 [exp] 471 / 6e-167 AT2G30105 503 / 1e-179 unknown protein Potri.015G048800 [exp] 177 / 4e-53 AT5G07910 341 / 2e-119 Leucine-rich repeat (LRR) family protein (.1) Potri.001G144100 [exp] 83 / 3e-17 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.011G121700 [exp] 82 / 6e-17 AT3G15410 749 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.007G065000 [exp] 82 / 6e-17 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 82 / 8e-17 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.006G072700 [exp] 81 / 1e-16 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.018G139700 [exp] 79 / 3e-16 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.003G090100 [exp] 79 / 5e-16 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.015G083800 [exp] 77 / 3e-15 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10031291 pacid=23151059 polypeptide=Lus10031291 locus=Lus10031291.g ID=Lus10031291.BGIv1.0 annot-version=v1.0 ATGGATCCGCCGACGGTGATCAAGGTAGCTGTAAAGTTCAGCGGGAGATTGATTCCCGTTTCGGTACCTCCGGACGGCACCGTTAAAGACCTCAAAGCTC TCCTTCAACCTCTCACAGATGTTCTCCCTCGAGGGCAGAAGCTCATTTTCCAGGGGAAGGTGTTGACTGACGCCATGACGTTGAGGGAATCGGAGGTAAA AAATGGGGCCAAGATCATGCTCGTTGCTTCCCAGGGTCTGCACCAAGGGAGTGGCCCTGTACTGAAAAATGCAGCTACCCGACCAATTTCAAGGGATAAG GTATCGTCGTCGGTGGCTGGAAAAGGGAAAGCGATTGCCCCTGATAAGAGCCAGTTGGAACGCTGGAAATCCACTGGAGTTATTGCTTTAGCTGAATGCA ACTTGAAGGTGTTGCCTGATGAAATTTGGGATTGTGGCTCCTCTGCAAGAGTTATTGATGTCAGGAACAACTCTCTGCAGGAGTTACCATGCAAGCTTCA ATCTTTGACTAACTTAAAGAAAATTATCATGAATGGGAATAGCATTTCAGATGGATCTATTTGCTGGGCAGAGATAACCACTCTGAAGCATCTAACAGCT TTAAATCTGAGCCAGAACCAATTAACAATCTTGCCTAAAGAAGTAGGTGCTCTGAGTTCTTTAAAGCAGCTTCATGTATCATTCAACAAATTGAATAGCC TTCCAGCTGAAATAGGACTCCTTTCTAAGCTCGAAGTTCTGATAGCAAGTAATAACAGGATAAACACCATCGATCCATCCATCGGAGGCTGCATTTCCCT TGTCGAGGTCGATCTTTCCTCAAATCTTCTGACTGATCTGCCAGAGACTATGGGCAATCTGCAACATCTCAAGGCATTGCACCTCGGTAACAACGGGCTA ACGACCCTCCCTTCAGTGCTGTTCAAGAGCTGCAAGCAGCTCTCGACTCTGGACCTGCACAACACGGAGATCACAATGGAAGTGCTGCGGAGCTACGAGG GATGGAATGATTTCGACCAGCGGAGGTGTTTGAAGCATCAGAAGCAGCTGGACTTCCGAGTGATGAGTTCCGGGGAGTTCGATGAAGGCGCAGATAAGAA TTGA
AA sequence Show only first row Show all	>Lus10031291 pacid=23151059 polypeptide=Lus10031291 locus=Lus10031291.g ID=Lus10031291.BGIv1.0 annot-version=v1.0 MDPPTVIKVAVKFSGRLIPVSVPPDGTVKDLKALLQPLTDVLPRGQKLIFQGKVLTDAMTLRESEVKNGAKIMLVASQGLHQGSGPVLKNAATRPISRDK VSSSVAGKGKAIAPDKSQLERWKSTGVIALAECNLKVLPDEIWDCGSSARVIDVRNNSLQELPCKLQSLTNLKKIIMNGNSISDGSICWAEITTLKHLTA LNLSQNQLTILPKEVGALSSLKQLHVSFNKLNSLPAEIGLLSKLEVLIASNNRINTIDPSIGGCISLVEVDLSSNLLTDLPETMGNLQHLKALHLGNNGL TTLPSVLFKSCKQLSTLDLHNTEITMEVLRSYEGWNDFDQRRCLKHQKQLDFRVMSSGEFDEGADKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30105			unknown protein		Lus10031291 [exp]	0	1
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10027373 [exp]	4.6	0.9220
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	8.5	0.9330
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	9.8	0.9318
AT1G80170			Pectin lyase-like superfamily ...		Lus10026798 [exp]	11.0	0.9147
AT1G69550			disease resistance protein (TI...		Lus10001038 [exp]	12.5	0.9232
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10021784 [exp]	13.0	0.9157
AT5G01950			Leucine-rich repeat protein ki...		Lus10003244 [exp]	15.0	0.9255
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	16.7	0.9325
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10027931 [exp]	21.0	0.9282
AT5G36930			Disease resistance protein (TI...		Lus10038532 [exp]	21.8	0.9080

Compare expression of checked genes

Lus10031291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.