Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30110 1649 / 0 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G06460 1642 / 0 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G21470 126 / 1e-29 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G19180 86 / 4e-17 ECR1 E1 C-terminal related 1 (.1) AT5G50580 78 / 3e-15 AT-SAE1-2, SAE1B SUMO-activating enzyme 1B (.1.2) AT5G50680 78 / 3e-15 ATSAE1B ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, SUMO activating enzyme 1B (.1.2) AT4G24940 76 / 3e-14 ATSAE1A, AT-SAE1-1, SAE1A SUMO-activating enzyme 1A (.1) AT1G05180 62 / 2e-09 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G32410 61 / 2e-09 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT1G05350 49 / 2e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031862 [exp] 2083 / 0 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10012507 [exp] 1646 / 0 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10022666 [exp] 762 / 0 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10022665 [exp] 694 / 0 AT2G30110 748 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10017479 [exp] 124 / 5e-29 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 106 / 3e-23 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10008977 [exp] 84 / 1e-16 AT4G24940 473 / 1e-168 SUMO-activating enzyme 1A (.1) Lus10034043 [exp] 84 / 2e-16 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 84 / 2e-16 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G075700 [exp] 1724 / 0 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 1716 / 0 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G280600 [exp] 1711 / 0 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G120200 [exp] 124 / 7e-29 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 119 / 3e-27 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.008G204000 [exp] 87 / 2e-17 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.010G031900 [exp] 85 / 6e-17 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.012G100800 [exp] 81 / 4e-16 AT4G24940 490 / 4e-176 SUMO-activating enzyme 1A (.1) Potri.015G099000 [exp] 76 / 2e-14 AT4G24940 498 / 4e-179 SUMO-activating enzyme 1A (.1) Potri.014G153500 [exp] 67 / 4e-11 AT1G05180 873 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family CL0063 [flax] [poplar] PF10585 [flax] [poplar] UBA_e1_thiolCys Ubiquitin-activating enzyme active site CL0063 [flax] [poplar] PF09358 [flax] [poplar] E1_UFD Ubiquitin fold domain
Representative CDS sequence Show only first row Show all	>Lus10031292 pacid=23151130 polypeptide=Lus10031292 locus=Lus10031292.g ID=Lus10031292.BGIv1.0 annot-version=v1.0 ATGTCGAAATTAGGGTTAGGAATTCTGATCGCGGTGGTTTTGCCGCCGATTTTCCTGGGAATGATGTTTGCCGCCAGTAATAACAACCACGGTAAAGCTA GAGCTCCTGGGTCGAGAACGTTGTCTACTTTGGTACTCGTATCAGTCGGCATTTCTGGCGTCGTCGGGAGTTTACTTTACTTTATGCTTCAGAGAAAACG TCCGGCTGGAAGGCTGGCTCACGAGGACGGCCAAAGAGTATTAGAAGAAGAAGAAGAGAAAGGTGACGATTCTCCAGCGACGTCTTCTGCTGTGATTAAG CAGCATCGTCATGACGCTGTGAGGGGGGCTCTATCCATGGCGCTTGGTGACATTGATGAGGATCTCCATAGCCGACAGCTTGCTGTGTATGGACGGGAGA CTATGCGGCGGCTTTTTGCCTCCAATGTGCTTGTCTCCGGGATGAATGGCCTTGGAGCTGAGATTGCAAAAAACTTGATCCTGGCCGGTGTAAAGTCTGT AACTTTACATGACGAAGGGCTCGTGGAGCTGTGGGATTTGTCCAGCAATTTTGTTTTCTCGGAGAAAGACGTGGGCAATAACAGAGCCCTTGCTTCTCTC CAGAAGTTGCAAGAACTGAACAATGCTGTTGCAGTTTCTGCAATGACATCTAGTTTGACAAAGGAACAACTTTCTGACTTCCAGGCTGTTGTATTTACGG ATATTGGTCTTGAGAAAGCTATGGAGTTTGATGAATTTTGCCACAATCACAAACCATCTATTGCTTTTATTAAATCTGAAGTGAGAGGTCTTTTTGGTTC TGTATTCTGTGACTTTGGACCTGAGTTCACTGTGGTTGACGTAGATGGAGAGGAACCACATACTGGCATTATTGCATCAATCAGTAATGACAATCCGGCA TTAGTATCATGCGTTGATGATGAGAGGCTTGAATTTCAAGATGGTGATCTTGTTATTTTCTCAGAAGTTCAAGGGATGACAGAACTTAATGATGGAAAAC TGAGAAAGATAACAAATGCTAGGCCATTTTCTTTTTCACTTGAGGAGGACACCACAAAGTTTGGTGCCTATACGAAAGGTGGCATTGTCACCCAGGTCAA GCAATCCAAGTTGTTGAACTTCAAAACACTACAAGAGGCACTTAAACATCCCGGGGATTTCCTTTTTAGTGATTTCTCTAAGTTCGATCGGCCATCTCTT CTGCACTTAGCATTTCAGGGTTTAGATAAGTTTTTGTCAGAGTTAAATCGCTTTCCTGTAGCTGGTTCAGAAGAGGACGCAGAAAAGTTTATACTGTTAG TAACCAACATCAACGAAGGCTTGGGAGACGGGAAATTAGAGGACATTAACCCCAAACTTCTACGGAAATTTGCCTTTGGTGCCAGAGCTGTGTTAAATCC TATGGCTGCTATGCTGGGTGGTGTTGTGGGTCAAGAGGTTGTGAAGGCGTGCTCTGGGAAGTTTTATCCTCTTTTTCAGTTTTTCTATTTTGACTCTGTG GAATCACTTCCTACAGAGGAGTTGGATCCCAGTGAACTGAGGCCATTAAATAGTCGTTACGATGCACAAATTTCTGTCTTTGGGTCCAAGCTTCAGAAGA AACTAGAGGATGCCAAGGTGTTTGTAGTAGGATCTGGTGCTCTAGGCTGTGAATTCTTGAAGAATTTAGCACTTATGGGAGTCTCATGTGGTGAAGAAGG GAAGCTTATTGTAACTGACGACGATGCGATTGAAAAAAGTAATCTGAGCAGACAGTTTCTTTTCCGTGATTGGAATATCGGTCAGGCCAAATCCAAAGTT GCTGCATCTGCTGCTGCATCAATAAATCCTCATCTCAAGATTGAAGCATTGCAAAATCGTGTGGGCCCAGAGACAGAAAATGTTTTTGATGATGCCTTTT GGGAGAATCTAACTTCTGTTTTAAATGCCTTGGACAACGTTAATGCTAGGCTATATGTTGATCAGCGGTGCTTGTACTTCCAGAAGCCATTACTCGAGTC CGGGACCTTAGGAGCAAAATGCAACACTCAGATGGTCATTCCTCGGCTAACTGAAAACTATGGGGCTTCAAGAGATCCACCTGAGAAACAAGCACCAATG TGTACCGTGCATTCTTTCCCACACAACATTGACCATTGCTTGACTTGGGCTCGGTCTGAGTTTGAGGGTTTGCTTGAGAAGACTCCAGCTGAAGTTAATG CATACCTTTCAAATCCAGTCGAATACACTGCAGCAATGATCAATGCGGCTGATGCTCAGTCAAGGGATACGCTGGAGCATGTCCTTGAGTGCCTTGACAA CGAAAGATGTGAGACCTTCAAGGATTGCGTTGCCTGGGCTCGTTTGAAATTTGAAGATTATTTTGCTAATCGAGTGAGGCAATTGATTTACACATTCCCG GAAGACGCTGCAACAAGTACTGGTGCTCCATTTTGGTCTGCACCAAAGCGGTTCCCTCGTCCACTCGAGTTCTCTGTTGATGATCCTAGCCACCTCCATT TTGTTATGGCAGCTTCCATTCTAAGGGCGGAAACGTTTGGCATCTCGGTTCCTGACTGGACCAATAATCGTAAAATGTTTGCAGAGGCTGTTGAGAAGGT GTTGCTGCCGGAATTTCAACCAAATAAAGATGCTAAAATTGTAACAGATGAGAAGGCTACCAGTGTTTCGGCATCATCAGACGATGATTCAGCCCAAATA AATGAACTTGTAATGAGATTAGAAAGCTGCCGGAAGTTGCTGCCCCCAGGCTTCAGAATGAAACCAATTCAATTTGAAAAGGATGATGACACGAACTACC ACATGGATCTGATAGCTGGGCTTGCCAACATGAGAGCAAGAAACTACAGCATTCCCGAGGTCGACAAGCTGAAAGCGAAGTTCATAGCTGGGAGGATCAT TCCTGCAATTGCAACCTCGACAGCTATGGCTACCGGCCTTGTATGCCTAGAGCTCTACAAAGTTCTTGACGGAGGACACAGAATCGAGGACTACCGGAAT ACATTTGCTAATCTAGCACTACCCTTGTTCTCCATGGCCGAGCCTGTCCCATGTAAAGTTATCAAGCACCGTGACATGAGCTGGACCGTTTGGGACAGGT GGATCTTCAATGGCAATCCCACTTTGAAGGAACTTCTCCTGTGGCTAGAGGAGAAAGGGCTTGATGCCTACAGTATTTCGTGCGGTAGCAGCTTGCTGTA CAATAGCATGTTCCCTAGGCACAAAGAAAGAATGGAGAGGAAGGTGGTGGATTTAGTTCGGGAAGTAGCCGGGGTAGAATTGCCTCCCGAATGTCGGCAC GTTGATGTCTTCGTGGCAGCCGAGGACGAAGAAGGAAACGACATCGACATCCCTCCTGTATCTATCTACTTCAGGTTGGCTGTCTTTTCCAACTGA
AA sequence Show only first row Show all	>Lus10031292 pacid=23151130 polypeptide=Lus10031292 locus=Lus10031292.g ID=Lus10031292.BGIv1.0 annot-version=v1.0 MSKLGLGILIAVVLPPIFLGMMFAASNNNHGKARAPGSRTLSTLVLVSVGISGVVGSLLYFMLQRKRPAGRLAHEDGQRVLEEEEEKGDDSPATSSAVIK QHRHDAVRGALSMALGDIDEDLHSRQLAVYGRETMRRLFASNVLVSGMNGLGAEIAKNLILAGVKSVTLHDEGLVELWDLSSNFVFSEKDVGNNRALASL QKLQELNNAVAVSAMTSSLTKEQLSDFQAVVFTDIGLEKAMEFDEFCHNHKPSIAFIKSEVRGLFGSVFCDFGPEFTVVDVDGEEPHTGIIASISNDNPA LVSCVDDERLEFQDGDLVIFSEVQGMTELNDGKLRKITNARPFSFSLEEDTTKFGAYTKGGIVTQVKQSKLLNFKTLQEALKHPGDFLFSDFSKFDRPSL LHLAFQGLDKFLSELNRFPVAGSEEDAEKFILLVTNINEGLGDGKLEDINPKLLRKFAFGARAVLNPMAAMLGGVVGQEVVKACSGKFYPLFQFFYFDSV ESLPTEELDPSELRPLNSRYDAQISVFGSKLQKKLEDAKVFVVGSGALGCEFLKNLALMGVSCGEEGKLIVTDDDAIEKSNLSRQFLFRDWNIGQAKSKV AASAAASINPHLKIEALQNRVGPETENVFDDAFWENLTSVLNALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPRLTENYGASRDPPEKQAPM CTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTAAMINAADAQSRDTLEHVLECLDNERCETFKDCVAWARLKFEDYFANRVRQLIYTFP EDAATSTGAPFWSAPKRFPRPLEFSVDDPSHLHFVMAASILRAETFGISVPDWTNNRKMFAEAVEKVLLPEFQPNKDAKIVTDEKATSVSASSDDDSAQI NELVMRLESCRKLLPPGFRMKPIQFEKDDDTNYHMDLIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHRIEDYRN TFANLALPLFSMAEPVPCKVIKHRDMSWTVWDRWIFNGNPTLKELLLWLEEKGLDAYSISCGSSLLYNSMFPRHKERMERKVVDLVREVAGVELPPECRH VDVFVAAEDEEGNDIDIPPVSIYFRLAVFSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	0	1
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	1.4	0.8811
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	1.4	0.8583
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	3.5	0.7857
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009011 [exp]	4.0	0.7604
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10033657 [exp]	6.2	0.7704
AT1G26580			unknown protein		Lus10037097 [exp]	9.0	0.7362
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10013077 [exp]	9.9	0.7057
AT4G00755			F-box family protein (.1.2)		Lus10038879 [exp]	10.0	0.6738
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10030056 [exp]	10.2	0.8016
AT5G09330	NAC	VNI1, ANAC082	VND-interacting 1, NAC domain ...		Lus10020896 [exp]	10.2	0.7450

Compare expression of checked genes

Lus10031292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.