Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07120 245 / 9e-79 unknown protein AT4G18570 161 / 1e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25690 135 / 5e-35 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G48280 108 / 3e-26 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031863 [exp] 503 / 1e-179 AT1G07120 393 / 2e-135 unknown protein Lus10000986 [exp] 174 / 1e-49 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 164 / 8e-46 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 162 / 4e-45 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034382 [exp] 140 / 8e-37 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 138 / 5e-36 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10033704 [exp] 50 / 2e-06 AT4G04980 311 / 4e-94 unknown protein Lus10013931 [exp] 0 / 1 AT4G18570 321 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073600 [exp] 309 / 7e-103 AT1G07120 434 / 4e-151 unknown protein Potri.001G279000 [exp] 301 / 7e-100 AT1G07120 440 / 2e-153 unknown protein Potri.004G054900 [exp] 181 / 3e-52 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G064500 [exp] 172 / 5e-49 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G460300 [exp] 155 / 4e-42 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 154 / 7e-42 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G130800 [exp] 143 / 6e-38 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G003100 [exp] 137 / 4e-36 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031293 pacid=23151125 polypeptide=Lus10031293 locus=Lus10031293.g ID=Lus10031293.BGIv1.0 annot-version=v1.0 ATGTTGAAGCAAGAGGAGGAATCGTTGATGCAGTACCTGAAGAAAGAAGTTGAAGCAGCTCTTGTGAGGAATGATCAGCTGGAGAGACAAAATCAAGAAC TGAGACAAGAGGTTGTTCATCTGAAGGCGCAGATCGCCGCCCTCAAAGCGCACGAGAATGAGAGGAAATCGATGCTCTGGAAGAAGTTTCAGAGCTTGAA CGAGGTAAGCAAGAACGATGTGTCTCTGCAGAAGCCACAGCAACAACAGCATCTCAAGGTACCAGAAGCCAGTCTAGAGCAGTTGAGTTCTAGGCCAAAA TTACCAGAAAGAACGGCGAAAGCACCATCAAACTTCCCGCCAGCACCGCCTCCTCCACCGTCAAAGATGTTTGTCGGGTCGAAATCAATTCGACGTGTTC CAGAAGTGATTGAGTTCTACCGTGCGGTCACCAAGAAGGATATGAACATGGACGCGAAGAAGAATCGTGTCGCCACATCAAATCTTGCATCAACGAAGGA CATGATAGGTGAAATAGAGAACCGTTCGACATATCTATCTGCTATAAAGTCTGATGTTGAGAAGCAGAAGCAACTGATAACTTCGTTAATCAAAGAAGTG GAGTTGGCAGCTTTCGAGGAAATATCGGAAGTGGAGACGTTCATGAAGAGGCTGGATAACCAGTTATCTTCACTGGTTGATGAAAGGGCAGTGTTGAAGC ATTTCCCACAGTGGCCAGAACAGAAAGTGGATGCTTTGAGAGAAGCTGCTTCCAACTACCAGAGCTTGAGAAACTTGGAGTCTGAAGTCTCATTATACGA GGACAACCCAAAGGAGCCATTGATGAAAGCTCTAGCAAAGATGCAAGCTTTGCAAGAAAGGTTAATTATTAGCATAGATTTTGTCATTCAATTGCAGAAT TACCCCCCCTCCCCTTGCCCCGATTCGAGTTGGTGGGAGAGGTTCATAATTAGTATATATTTCCTTCGCTGCCAGTAG
AA sequence Show only first row Show all	>Lus10031293 pacid=23151125 polypeptide=Lus10031293 locus=Lus10031293.g ID=Lus10031293.BGIv1.0 annot-version=v1.0 MLKQEEESLMQYLKKEVEAALVRNDQLERQNQELRQEVVHLKAQIAALKAHENERKSMLWKKFQSLNEVSKNDVSLQKPQQQQHLKVPEASLEQLSSRPK LPERTAKAPSNFPPAPPPPPSKMFVGSKSIRRVPEVIEFYRAVTKKDMNMDAKKNRVATSNLASTKDMIGEIENRSTYLSAIKSDVEKQKQLITSLIKEV ELAAFEEISEVETFMKRLDNQLSSLVDERAVLKHFPQWPEQKVDALREAASNYQSLRNLESEVSLYEDNPKEPLMKALAKMQALQERLIISIDFVIQLQN YPPSPCPDSSWWERFIISIYFLRCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07120			unknown protein		Lus10031293 [exp]	0	1
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	2.0	0.9183
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	4.2	0.8628
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10042913 [exp]	9.5	0.8428
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016633 [exp]	15.0	0.8741
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Lus10033812 [exp]	16.2	0.7961
AT3G07570			Cytochrome b561/ferric reducta...		Lus10001180 [exp]	16.2	0.8220
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	17.0	0.8600
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10012778 [exp]	23.3	0.8468
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10020758 [exp]	24.4	0.8459
AT1G18880		NRT1.9	nitrate transporter 1.9, Major...		Lus10015351 [exp]	30.1	0.7344

Compare expression of checked genes

Lus10031293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.