Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58520 795 / 0 Protein kinase superfamily protein (.1) AT5G07140 724 / 0 Protein kinase superfamily protein (.1) AT5G58660 241 / 3e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G47190 200 / 6e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G17700 174 / 6e-46 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 174 / 9e-46 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 169 / 6e-44 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 154 / 4e-40 Protein kinase superfamily protein (.1.2.3.4) AT5G58950 152 / 9e-39 Protein kinase superfamily protein (.1) AT4G21200 145 / 7e-38 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031864 [exp] 1112 / 0 AT5G58520 805 / 0.0 Protein kinase superfamily protein (.1) Lus10031865 [exp] 244 / 5e-75 AT5G58660 117 / 2e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023989 [exp] 175 / 6e-46 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 172 / 1e-45 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 174 / 2e-45 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 177 / 7e-45 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10006759 [exp] 157 / 6e-42 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10020374 [exp] 155 / 2e-40 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10030567 [exp] 150 / 2e-39 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280700 [exp] 868 / 0 AT5G58520 800 / 0.0 Protein kinase superfamily protein (.1) Potri.009G075900 [exp] 866 / 0 AT5G58520 787 / 0.0 Protein kinase superfamily protein (.1) Potri.001G278200 [exp] 273 / 3e-83 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G015400 [exp] 175 / 3e-46 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 171 / 7e-46 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 173 / 1e-45 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 171 / 1e-45 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 172 / 5e-45 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 171 / 1e-44 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 170 / 2e-44 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10031294 pacid=23150954 polypeptide=Lus10031294 locus=Lus10031294.g ID=Lus10031294.BGIv1.0 annot-version=v1.0 ATGAACGATGACGAGGACGACCAACAGCTATCTTACCCGCCGGTATTCCGCCGCCAACAAACCACCACCGCCACTACCAAACCATCCTCTCCTCCTGATC AGGTGGCGGCGACGCCAGTAATCAATCTGGAGAATCCAGACATGGAGATTCTCCGAGGAGCGTGCAAGGAGTGGGGGGTTTTTCGGGTGGTCAACCACGG TGTCCCCACTCCACTAATTCGCCAGCTTAAGTCCCACGCCAGGGAATTCTTCCGCCAGCCATTCGAGTCGAAGCTCGCAGCGGCGGAAGCTAGTAGTAAT TCCTCCTACTTCTGGGGCAGCCCAGCGTTGACCTCGTCGGGCCGTCCTGTGGAGAGGAAGGAAGTCAACTGGGTTGAAGGGGTCAACTTCAGTGGGTTGT CTCCGTCGGGTTCGAGTTCCTCCAGCTCCGACCCTGATTTCTTTCGTTCTCTCAGAACGCTGGTGGAAGAGTACGGCGAACACGTGGGGAGGATAGCCAG GAAGATGGTGGAGGCGATGGGAGAGCTGCTGGGAGTGGATGATTGCGGTGCTTACATGTCGGAATCCACCGGCATCATCCGCGTTTACCGCTACCCTCAG ACTCCAGCTCAGCATGATCAGACGGCGGCGCCGCCTATGGGAATGCATGCCCATACCGACAGCTCGTTGGTGTCGATCGTGTTGGAAGACGACAAAGTGA GTGGGCTCCAATTCATCAAGGACGACAACGTCACCTCCGCCGGTGATGACGACGGCAGCGGCGGCGGTAATTGGCTGACTCTTCAGCCTGTCCCCGACAC CCTATTGATCAACATCGGAGACATGATTCAGGCTATAAGTAACGACGAGTTTACGAGTGTGAAGCACAGGGTAAAAGTAGAAACAAGTAATGAAAATCGA ATCTCGATATGTTACTTCGTATTTCCTGGAGAAGGCAAAGCAATCGAGACTTCCAAATACAAGCCTTTTACCTACGAGGAATTCCACCAACAAGTATTAG AGGACACTAAGAATCTCGGATTTAAAGTCGGCCTCGAAAGCTCCGGACTTCTCGATGGAGTGGGCGGCCCGCAGATCGCTCTCGAAGGTGGGCAAGATAA CCAAGAAAGCACGTTATGGGTCCCTGCCCTCCTCAATGGCTTAACTTTCTTAGGGACGTCGGTTAATAGAGTAGAGGGTCAGCCTCACGGTAAAACAGAA CTCTATTTCGACCTGGTTAATCGGTTAAGACCAACGACTCGGTCGGTTAACAGTTATAAAGTTCAGAAATTTTTTAACCAACCGGCCACCCGAAGATACT GCCCAATTAAATCGGGCTGGGTTCCACATTTCAGCTGCCGTAGTACGTGGGCTAAAACAACACATTGGGCTGGGCTTCAACCAAGCCCAAAAAGTCGAGG ATTCCAAGCGCTGGAATGTTGGTCCAGCAGCAGGGCGGCGAAGAGCACCGCCTCCGCCTCCGCCGATGAGGACATGGTGGAGCAAGTCTTGATGGGTTCC AACAACAGATCCGAATCAGCTCCCGATCACGTACACGACAGGGATCCTTCCTCCTCCGGGATGCAGAAGCGGTTCCAGAAGCTATCTCGCAACGTCTCTG AAGCCATCTCCTCGATTAAGAACTCGCTCAATCTGGATTCGGTTCGAGAAATCAATTATCAGCAGCAAGGAGGAGTTGGTAATGGTAAAGGAAGAGTTGA TCAGAGCTGCCGGAAGCTTGTTTGGGCTACCGTTGTACGGAATCTGACCCAGTTGTATCCAGGGAGCCAGCTGCCGGAGAAGCTCGTTTCCAGTATTAAG AAGCATTACGATTCCTTGCCCTTGAGTTATGCACAGGCGGAATTCGATATGAAAGAAGTGTTCCTCCACATGAAATTGATGGAGCAGGCGGTAGCCGATG AGCATCCATCGATGATGCTCCACGAGGTTTCCGACGATGAGGTACACGGTACTGTATTCAAGCTTACGTTCGCTTGCAACTCTCCGATTTCCTGGCCAGC AATGTCCGGTGCATTGGACAGTGCTTCGATGTGTTGCAAGAAGATCCAGATCTTCGAAAAGAAAGGTTTCACACTGGGAGTGGTTCTTCTTTTGGTTCAA GCTGGTCAAGAGAGGCTGTTCAAGGCTAGGATCGAGAGTGCTTTGAAATTCGCTGCAAAGAAACCGAAATCGAACACTGTCAAGCTTTCGTTCGGACTAT GTGGATGCCAGGATGAGAATTCTAGAGGAGGTAGGGAGTTTGGGGAGATTGAAGAGGATCCTTGTGATCATGTTAGTTACAGAAATGGGATCATCCAGCT TGAAATGCCATTGTCCAGCTCGAAATTCATGGTATCGGTAGACGAATGGCAGACGGTTCAATCAGGTGGCGACGATCTCGGAAAATGGCTCCTGAATCAT GATAACCTAGAGTTCACCGATCAGATCGGTCCGACCTCCTTCAAAGGATTGTACAAGGGTAAAAAAGTCGGAATCGAGAAGCTGAAAGGTTGCGAGAAGG GGAACGCCTACGAATTCGAAGTCCGTCGAGACCTACTCGAGCTGATGACCTGTGGGCATAAGAACGTCCTGCAGTTTCACGGCGTGTGTGTCGACGAAAC CCACGGATTGTGCGTGGTCACGAAGCTGATGGACGGGGGATCGGTCAACGAGCTAATGTTCAAGAGCAAGAATAATAAGCTTCAAACTAAGGAGATACTG AGGATTGCTGTTGATGTAGCGGAAGGGCTCGGGTTCTTGAACGATCATGGCGTGGCGTTTCGAGACCTTAATACTCAGAGGATTCTGTTGGATAGACATG GCAATGCTTGCTTGGGGGACCTCGGTATCGTGACATCTTGCAAGAATGCTGGCGAGGCGCTCGAGTACGAAACCGATGGCTACCGCTGGCTAGCCCCTGA GATAATAGCAGGAGACCCGGAGTCGGTCTCCGAGACATGGATGAGCAACGTGTACAGTTTCGGGATGGTGATATGGGAGATGGTGACCGGCGAGGCTGCC TATGGTTCGTGCTCGCCTGTGCAGGCCGCAGTCGGTATAGCTGCTTGCGGACTCAGACCTGAGATCCCTAAGGACTGCCCGCAAATCCTCAGGTCTCTGA TGACCAAGTGCTGGAACAACGTCCCTTCCAAGCGGCCAAATTTCGACGAGATCCTGTCGGTTTTGTAG
AA sequence Show only first row Show all	>Lus10031294 pacid=23150954 polypeptide=Lus10031294 locus=Lus10031294.g ID=Lus10031294.BGIv1.0 annot-version=v1.0 MNDDEDDQQLSYPPVFRRQQTTTATTKPSSPPDQVAATPVINLENPDMEILRGACKEWGVFRVVNHGVPTPLIRQLKSHAREFFRQPFESKLAAAEASSN SSYFWGSPALTSSGRPVERKEVNWVEGVNFSGLSPSGSSSSSSDPDFFRSLRTLVEEYGEHVGRIARKMVEAMGELLGVDDCGAYMSESTGIIRVYRYPQ TPAQHDQTAAPPMGMHAHTDSSLVSIVLEDDKVSGLQFIKDDNVTSAGDDDGSGGGNWLTLQPVPDTLLINIGDMIQAISNDEFTSVKHRVKVETSNENR ISICYFVFPGEGKAIETSKYKPFTYEEFHQQVLEDTKNLGFKVGLESSGLLDGVGGPQIALEGGQDNQESTLWVPALLNGLTFLGTSVNRVEGQPHGKTE LYFDLVNRLRPTTRSVNSYKVQKFFNQPATRRYCPIKSGWVPHFSCRSTWAKTTHWAGLQPSPKSRGFQALECWSSSRAAKSTASASADEDMVEQVLMGS NNRSESAPDHVHDRDPSSSGMQKRFQKLSRNVSEAISSIKNSLNLDSVREINYQQQGGVGNGKGRVDQSCRKLVWATVVRNLTQLYPGSQLPEKLVSSIK KHYDSLPLSYAQAEFDMKEVFLHMKLMEQAVADEHPSMMLHEVSDDEVHGTVFKLTFACNSPISWPAMSGALDSASMCCKKIQIFEKKGFTLGVVLLLVQ AGQERLFKARIESALKFAAKKPKSNTVKLSFGLCGCQDENSRGGREFGEIEEDPCDHVSYRNGIIQLEMPLSSSKFMVSVDEWQTVQSGGDDLGKWLLNH DNLEFTDQIGPTSFKGLYKGKKVGIEKLKGCEKGNAYEFEVRRDLLELMTCGHKNVLQFHGVCVDETHGLCVVTKLMDGGSVNELMFKSKNNKLQTKEIL RIAVDVAEGLGFLNDHGVAFRDLNTQRILLDRHGNACLGDLGIVTSCKNAGEALEYETDGYRWLAPEIIAGDPESVSETWMSNVYSFGMVIWEMVTGEAA YGSCSPVQAAVGIAACGLRPEIPKDCPQILRSLMTKCWNNVPSKRPNFDEILSVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58520			Protein kinase superfamily pro...		Lus10031294 [exp]	0	1
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	2.0	0.6933
AT2G33630			NAD(P)-binding Rossmann-fold s...		Lus10013202 [exp]	4.8	0.7013
AT4G20070		ATAAH	allantoate amidohydrolase (.1)		Lus10036233 [exp]	20.1	0.6012
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10036940 [exp]	20.3	0.6673
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10037738 [exp]	23.7	0.6223
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039401 [exp]	27.2	0.6685
AT5G05190			Protein of unknown function (D...		Lus10030508 [exp]	29.5	0.6003
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002347 [exp]	38.7	0.6303
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	39.8	0.5958
AT3G49650			P-loop containing nucleoside t...		Lus10011579 [exp]	51.6	0.6142

Compare expression of checked genes

Lus10031294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.