Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73340 620 / 0 Cytochrome P450 superfamily protein (.1) AT3G50660 300 / 1e-95 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT3G13730 278 / 1e-87 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT5G05690 275 / 1e-86 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 260 / 2e-80 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT1G12740 235 / 2e-71 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G30180 220 / 7e-66 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT4G19230 219 / 2e-65 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 217 / 1e-64 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT5G38970 213 / 2e-63 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031866 [exp] 890 / 0 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10016065 [exp] 271 / 1e-84 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10014850 [exp] 264 / 3e-82 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10040193 [exp] 264 / 3e-82 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10024016 [exp] 249 / 3e-77 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10028345 [exp] 248 / 7e-76 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 243 / 2e-74 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 243 / 2e-74 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10024495 [exp] 237 / 6e-72 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G154600 [exp] 680 / 0 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.007G026500 [exp] 316 / 2e-102 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 309 / 9e-100 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.010G189800 [exp] 286 / 4e-91 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 282 / 2e-89 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.014G171700 [exp] 277 / 1e-87 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.007G018400 [exp] 269 / 3e-84 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.001G200100 [exp] 268 / 7e-84 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 268 / 1e-83 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.001G341000 [exp] 259 / 1e-80 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10031295 pacid=23151072 polypeptide=Lus10031295 locus=Lus10031295.g ID=Lus10031295.BGIv1.0 annot-version=v1.0 ATGGAGTTCCGAAATCCCACCTCCGCCGCCGCCGGCGAATCAACAACCGCCGTCCTCCTCTCAACACTACTCTTCCTAATCTGCTTATCCACCTTCATCT TTTCCCACCTACGACGCCAATTCCAAAACAACAACAACCACACTGAAAAACAGAGTCGGCTGCCGCCGGGGAGCAGAGGGTGGCCGGTGATCGGCGACAG CTTCAGCTGGTACAATGCGGTGCTGGGTTCCCACCCGCCGGAGTTCGTTGAGCGGCAGGTGGCCCGGTTCGGGAGTAAGGTCTTCTCGTGCAGGCTGTTC GGCGGGTACTGGGCGGTTGTGTCGGCTGACCCAGGGTTCAACCGGTTTGTGATGCAGAGCGAAGGGCGGCTGTTCAAATCGAGCTACCCGAAACCGTTTC GTGATCTGGTTGGGAAGAACGGGGTGGTTACTGCTCAAGGCGAGCAGCAGAGGAAGCTCCACGGGATTGCTTCCGGTTTGATGAAGGTGGAGCGGTTCAA CCGGACCGGTTTTATTGAGGAGATTCAGTCGGTTATGATTCGGACTCTGGGTGTTTGCTCCGGCGAGGGTGACCGGGTCATTTGCCTGCAGGATCTTTGT AGAAAGGTGGCAATCAATCTAATGGTGAACCAGTTGTTGGGCGCGTCGTCGGACATGGAAGTCGACGAAATGGCGCAGCTGTTCTCCGACTTCGTCGACG GCTGTCTCTCCGTCCCCGTCACTTTGCCTGGCTTTGCTTACCATACGGCTGTGAAGGCAAGGGAGAAAATCACGAGCAAGATAAACAAGGTGGCAGCAAA AACCAGAGGTGAAGAAACCTCGGGGGAGGAGGATACTTGCGGGGCAAGTAAGGGTTTGCTCGGGAGGGTATTGAAAGAAGGAAGCATAGACGACGATGCG GTATCCGATTTCATCATTAATCTCCTCTTTGCCGGCAACGAAACCACCGCCAAGACGATGGTCTTCGCTGTTTACTTCCTCACTCGTTGCCCGAAAGCAA TGCAGCAACTTCTGGAGGAACAAGATGGACTGAGCCGCGACCGGATGCTCACGTGGGATGATTATAAAGCCATGCCCTTCACTCAGTGTGTAATTGATGA GACACTACGACTTGGGGGCATAGCAATCTGGCTATTCAGGGAGGCTATAGAAGATGTATCATATGAAGATTATGTTATTCCGAAAGGAAGCTTAGTCGTC CCATTTCTATCGGCGGTCCATCTGGATGACAAACTGTACGACGAAGCTCGTAAATTCAACCCATGGAGATGGACGGAGCCTGAGAATCAGGGCAAGAGAA ATTGGAGGAGCAGTCCGTATTTTACACCGTTCGGGGCAGGAGCTCGGTTCTGCCCCGGAGCAGAGCTAGCTCGTCTCCAGATTGCTATGTTTCTTCATTA CTTCGTGACAACTTACAAGTGGACGCAAGTGAAAGAAGATAGGATGTCATTCTTCCCCTCTGCTCGTCTCGTGAATGGCTTTCAGATTCGGTTGTGTAGA CGGAAAGAGAAGGAAGAACTTGAATTAGACTTGCAACACACATAA
AA sequence Show only first row Show all	>Lus10031295 pacid=23151072 polypeptide=Lus10031295 locus=Lus10031295.g ID=Lus10031295.BGIv1.0 annot-version=v1.0 MEFRNPTSAAAGESTTAVLLSTLLFLICLSTFIFSHLRRQFQNNNNHTEKQSRLPPGSRGWPVIGDSFSWYNAVLGSHPPEFVERQVARFGSKVFSCRLF GGYWAVVSADPGFNRFVMQSEGRLFKSSYPKPFRDLVGKNGVVTAQGEQQRKLHGIASGLMKVERFNRTGFIEEIQSVMIRTLGVCSGEGDRVICLQDLC RKVAINLMVNQLLGASSDMEVDEMAQLFSDFVDGCLSVPVTLPGFAYHTAVKAREKITSKINKVAAKTRGEETSGEEDTCGASKGLLGRVLKEGSIDDDA VSDFIINLLFAGNETTAKTMVFAVYFLTRCPKAMQQLLEEQDGLSRDRMLTWDDYKAMPFTQCVIDETLRLGGIAIWLFREAIEDVSYEDYVIPKGSLVV PFLSAVHLDDKLYDEARKFNPWRWTEPENQGKRNWRSSPYFTPFGAGARFCPGAELARLQIAMFLHYFVTTYKWTQVKEDRMSFFPSARLVNGFQIRLCR RKEKEELELDLQHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73340			Cytochrome P450 superfamily pr...		Lus10031295 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10028060 [exp]	7.5	0.8663
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	12.7	0.8243
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	23.8	0.8297
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10008259 [exp]	34.5	0.7616
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	38.5	0.7868
					Lus10013619 [exp]	41.2	0.7723
AT2G34930			disease resistance family prot...		Lus10006948 [exp]	44.4	0.8103
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	53.4	0.7928
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	54.4	0.8052
					Lus10010684 [exp]	56.6	0.8029

Compare expression of checked genes

Lus10031295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.