Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47340 145 / 1e-40 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) AT5G65010 142 / 4e-39 ASN2 asparagine synthetase 2 (.1.2) AT5G10240 142 / 6e-39 ASN3 asparagine synthetase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031870 [exp] 160 / 2e-45 AT3G47340 1001 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10042281 [exp] 147 / 7e-41 AT3G47340 1068 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10024052 [exp] 144 / 8e-40 AT5G10240 1013 / 0.0 asparagine synthetase 3 (.1.2) Lus10041698 [exp] 126 / 7e-33 AT5G10240 976 / 0.0 asparagine synthetase 3 (.1.2) Lus10026376 [exp] 118 / 7e-33 AT3G47340 138 / 3e-38 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10026379 [exp] 84 / 7e-19 AT3G17930 170 / 1e-52 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072900 [exp] 146 / 2e-40 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.001G278400 [exp] 145 / 4e-40 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.005G075700 [exp] 143 / 2e-39 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00733 [flax] [poplar] Asn_synthase Asparagine synthase
Representative CDS sequence Show only first row Show all	>Lus10031300 pacid=23151121 polypeptide=Lus10031300 locus=Lus10031300.g ID=Lus10031300.BGIv1.0 annot-version=v1.0 ATGATGTGCGGGATATTAGCAGTGTTGGGTTGCTTCGACGACTCTCAGGCGAAGAGGGCTCGAGTTTTGGAGCTCTCCCGGCGGCTCAAGCACCGTGGGC CGGACTGGAGCGGCCTGTACCAGTTCAAAGACTGTTACTTGGCCCATCAACGTCTGGCCATCGTTGACCCTGACTCCGGCGACCAGCCCCTCTTCGGCGA GGACGAATCGGTGGTTGTCACCGTCAACGGCGAGATTTATTTTCTTGGTGTCGAGGAGGATCAAGGCTACAGGGGTGAAGATGGTGATCTCAGGTATGGT GTGGGAGACGGCACCGGGAAGGCCCTCCATCTGTACGACAGCCTGAGAGCCAACAAGGCCACCTCAGCTTGGGGGCTGGAGGCTCGGATCCCGTTATTGG ACAAGGAGTTCCTCGACGTCGCCGTGGACATTGACCCTGAATGGAAGATGGTTCAGCCAGAGGACGGAAAGATGGAGAAATGGGTTCTTAGGAAAGCTTT TGATGATGAAGACAGACCTTACCTCCCTAAGAACTCGGCCAAGGTGACGGTTCCTGGAGGAGCAAGTGTGGCTTGCAGCACAGCCAAAGCTGTGGAATGG GATGCTGCTTGGTCGGCCAATCCTGATCCTTCGGGGCGAGCTGCTTTGGGTGTTCATCTTTCGGCTTACACGGATTCTGGAACGTCGGCTGCTCCGAAGA TCATCGAGAGTGTTCCGAGGATGATGGAAGTGGGATGA
AA sequence Show only first row Show all	>Lus10031300 pacid=23151121 polypeptide=Lus10031300 locus=Lus10031300.g ID=Lus10031300.BGIv1.0 annot-version=v1.0 MMCGILAVLGCFDDSQAKRARVLELSRRLKHRGPDWSGLYQFKDCYLAHQRLAIVDPDSGDQPLFGEDESVVVTVNGEIYFLGVEEDQGYRGEDGDLRYG VGDGTGKALHLYDSLRANKATSAWGLEARIPLLDKEFLDVAVDIDPEWKMVQPEDGKMEKWVLRKAFDDEDRPYLPKNSAKVTVPGGASVACSTAKAVEW DAAWSANPDPSGRAALGVHLSAYTDSGTSAAPKIIESVPRMMEVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65010		ASN2	asparagine synthetase 2 (.1.2)		Lus10031300 [exp]	0	1
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10029226 [exp]	3.5	0.9054
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10008264 [exp]	6.2	0.8716
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	10.5	0.8834
AT3G47570			Leucine-rich repeat protein ki...		Lus10031043 [exp]	13.6	0.8312
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10029460 [exp]	13.6	0.8354
AT1G47530			MATE efflux family protein (.1...		Lus10002367 [exp]	28.0	0.8368
AT3G47570			Leucine-rich repeat protein ki...		Lus10037310 [exp]	29.1	0.8703
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10012823 [exp]	31.4	0.7883
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10021388 [exp]	32.4	0.8435
					Lus10031026 [exp]	33.0	0.8696

Compare expression of checked genes

Lus10031300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.