Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58600 447 / 1e-156 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 414 / 2e-143 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT1G29050 360 / 1e-122 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 345 / 7e-117 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT3G14850 337 / 5e-114 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT2G31110 328 / 2e-110 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G42570 327 / 1e-109 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G30900 320 / 4e-107 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT1G78710 305 / 2e-101 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT5G49340 291 / 2e-94 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031871 [exp] 776 / 0 AT5G58600 450 / 8e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10000988 [exp] 343 / 2e-116 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 343 / 3e-116 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10033617 [exp] 323 / 2e-108 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10002198 [exp] 322 / 4e-108 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10015309 [exp] 321 / 2e-107 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10024176 [exp] 301 / 3e-99 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039559 [exp] 299 / 6e-99 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10021066 [exp] 300 / 3e-96 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G278300 [exp] 533 / 0 AT5G58600 525 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.009G072800 [exp] 519 / 0 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.011G064700 [exp] 360 / 9e-123 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 338 / 2e-114 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 337 / 5e-114 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.013G118500 [exp] 337 / 7e-114 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.019G090200 [exp] 337 / 1e-113 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G106300 [exp] 332 / 4e-112 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.003G201600 [exp] 332 / 7e-112 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106200 [exp] 328 / 3e-110 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10031301 pacid=23151129 polypeptide=Lus10031301 locus=Lus10031301.g ID=Lus10031301.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCGTCCTCTCTGGCAAACAACCCATTACTACAATACCTCCTAACAATAACATCCATCTTCTTCTTAGCTCTACTTCTGCAAACCCATCCAA CCAACTCAGCTCTAATCCTAACCTACAGAAACCACCACCACCACAATAACAACATCAACAACAACCCATTCCCTCCCCGATTCCAAACCAACCGAACCAA CGGCTGCGCATTGTTCGAAGGCACCTGGGTCCGCGACGACTCCTACCCGCTCTACTCTTCCTCCACTTGCTCCTTCATCGACCGAAATTTCAACTGCGAG TTCTACGGCCGCCCCGATTTCACTTACCCCAAGTACCGCTGGCAGCCCCTCGGCTGCGAGCTCCCCAGATTCGATGGGTTGCAGTTTCTGCAGAGGCTGA GTGGGAAGAGTGTGATGTTCGTCGGGGATTCGATCGGGAGGGATCAGTATGAGTCGTTGATCTGTATGATTATGGCGACGGCTCCCAAGGCTGCTAGCCA GATGAACGGCGGTGATCCTCTCTCCACCGTCAAGTTCCCGGAGTATGGAGTTACGATCTCATTCTACAAGACGCCATACTTGGTTGACATTGGCATGGAG CATGGCAAGAGAGTGTTGAAGCTAGATGACATCTCCAGCAACGCCGACGTATGGCGAAATGCCGACGTTTTGTACTTCAACACCGGCCATTGGTGGAACC ACCAAGGATCCCTCCAAGGATGGGAATACATGGAAACAGGAGGAAACTACTACAAAGACATGGATCGACTGACGGCAATGGAGAGAGCTGTACAAACATG GGGGAACTGGGTCGACAGCAACATCGACCGCTCAAAAACTCGCGTCTTCTTCCTCTCCACTTCCCCTACACACTACGATCCTAGCTTGTGGAGCTCGGGG GAGACAGCGGCCACGAAGAACTGCTATGGGGAAACATCGCCTGTGAGCGGAACAACATACCCGGGAGCATTCCCCGATCAGATGAGGGTGCTGGAAGGCG CACTTCAGCGGATGAAGAGGCCACCATTCCTGATGGACATCACATTGCTCTCGGGGCTAAGGAAAGACGCGCACCCTTCGATTTACAGCGGCGATCTGAG CCCTCAAGAGCGAGCTAACCCGCTGAGATCGGCTGACTGTAGCCATTGGTGCCTCCCGGGCTTACCTGATACTTGGAACCAGTTGCTGTATACTGCTCTG TTCTTCTAG
AA sequence Show only first row Show all	>Lus10031301 pacid=23151129 polypeptide=Lus10031301 locus=Lus10031301.g ID=Lus10031301.BGIv1.0 annot-version=v1.0 MASSSSLANNPLLQYLLTITSIFFLALLLQTHPTNSALILTYRNHHHHNNNINNNPFPPRFQTNRTNGCALFEGTWVRDDSYPLYSSSTCSFIDRNFNCE FYGRPDFTYPKYRWQPLGCELPRFDGLQFLQRLSGKSVMFVGDSIGRDQYESLICMIMATAPKAASQMNGGDPLSTVKFPEYGVTISFYKTPYLVDIGME HGKRVLKLDDISSNADVWRNADVLYFNTGHWWNHQGSLQGWEYMETGGNYYKDMDRLTAMERAVQTWGNWVDSNIDRSKTRVFFLSTSPTHYDPSLWSSG ETAATKNCYGETSPVSGTTYPGAFPDQMRVLEGALQRMKRPPFLMDITLLSGLRKDAHPSIYSGDLSPQERANPLRSADCSHWCLPGLPDTWNQLLYTAL FF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031301 [exp]	0	1
AT4G24265			unknown protein		Lus10007441 [exp]	1.7	0.8793
AT2G26970			Polynucleotidyl transferase, r...		Lus10037420 [exp]	2.4	0.8605
AT5G60370			unknown protein		Lus10038466 [exp]	3.5	0.8274
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026140 [exp]	4.2	0.8321
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10000630 [exp]	5.8	0.8694
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10012654 [exp]	6.8	0.8133
AT1G28610			GDSL-like Lipase/Acylhydrolase...		Lus10010208 [exp]	8.8	0.7927
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10035899 [exp]	12.5	0.7849
AT4G28600		NPGR2	no pollen germination related ...		Lus10007743 [exp]	16.7	0.7955
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	20.0	0.7807

Compare expression of checked genes

Lus10031301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.