Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39530 85 / 7e-21 Uncharacterised protein family (UPF0497) (.1) AT2G39518 72 / 8e-16 Uncharacterised protein family (UPF0497) (.1) AT2G36330 47 / 4e-06 Uncharacterised protein family (UPF0497) (.1) AT2G38480 42 / 6e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031304 [exp] 204 / 5e-67 AT2G39518 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031874 [exp] 197 / 1e-64 AT2G39530 92 / 1e-23 Uncharacterised protein family (UPF0497) (.1) Lus10031305 [exp] 197 / 2e-64 AT2G39530 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031873 [exp] 157 / 2e-49 ND 47 / 4e-07 Lus10031875 [exp] 150 / 7e-46 AT2G39530 86 / 4e-21 Uncharacterised protein family (UPF0497) (.1) Lus10023416 [exp] 64 / 2e-12 AT2G39530 132 / 4e-39 Uncharacterised protein family (UPF0497) (.1) Lus10040298 [exp] 50 / 1e-07 AT2G39518 106 / 2e-29 Uncharacterised protein family (UPF0497) (.1) Lus10005154 [exp] 45 / 1e-05 AT3G55390 233 / 2e-78 Uncharacterised protein family (UPF0497) (.1) Lus10001709 [exp] 44 / 3e-05 AT3G55390 231 / 1e-77 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G040100 [exp] 145 / 6e-44 AT2G39518 79 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Potri.010G204700 [exp] 66 / 2e-13 AT2G39530 112 / 2e-31 Uncharacterised protein family (UPF0497) (.1) Potri.016G128200 [exp] 49 / 3e-07 AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1) Potri.008G053500 [exp] 47 / 9e-07 AT3G55390 238 / 6e-81 Uncharacterised protein family (UPF0497) (.1) Potri.010G207000 [exp] 47 / 2e-06 AT3G55390 243 / 8e-83 Uncharacterised protein family (UPF0497) (.1) Potri.015G075100 [exp] 46 / 7e-06 AT2G36330 247 / 3e-81 Uncharacterised protein family (UPF0497) (.1) Potri.012G079800 [exp] 43 / 5e-05 AT2G36330 218 / 3e-70 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10031303 pacid=23151138 polypeptide=Lus10031303 locus=Lus10031303.g ID=Lus10031303.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCACAGAGTGGATCATCATCGAAAGTCGTCCTGGTTCTCCGACTGGCAACTCTGTTCCTTCTGGTGGGAGCTGTTATGGTTCTGGTGTTCA ACACTGTTACCGTCACACTTGATCTCAGGACCTTCACCATCACGTTCCCGCCTGCCAAGCTCACTTTCAAGGACCTCGTCACCTTCAAGTACATGCTTGC TGTTGCTGTCATTTCAGCAGCATACACAATCTTCCAGCTCCCTCTAGCAATCTACCACATCCTCAAGGGGAAGAGGCTGATGAATCGAGACTGCTTGCCT CAGTTCGATTTCTACGCAGACCAGGTAGTTGCCTACCTGCTAGGGACAGCAGTCGGTGCAGGGTTCCTCGTCTGTGTGGAGCTCAAGATCAATCTGACCA AGATGATCAACTCCCTTGAAGAAGTGATCACAGAAGGGCTCGAGGATTCGCGCAAAAGCTACGACAAGTTCGTTAACTACGGATTCATTGCTTCAGCATT GGTTTGCTTGGCGTTCACTTGTATGGCGGTTGTGTCTGCTCTCTCTTCTGCGAACCGCAGCAAGACAGAAAGGAAGTCCTTCTTTGGCTGA
AA sequence Show only first row Show all	>Lus10031303 pacid=23151138 polypeptide=Lus10031303 locus=Lus10031303.g ID=Lus10031303.BGIv1.0 annot-version=v1.0 MASSQSGSSSKVVLVLRLATLFLLVGAVMVLVFNTVTVTLDLRTFTITFPPAKLTFKDLVTFKYMLAVAVISAAYTIFQLPLAIYHILKGKRLMNRDCLP QFDFYADQVVAYLLGTAVGAGFLVCVELKINLTKMINSLEEVITEGLEDSRKSYDKFVNYGFIASALVCLAFTCMAVVSALSSANRSKTERKSFFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39530			Uncharacterised protein family...		Lus10031303 [exp]	0	1
					Lus10031873 [exp]	1.7	0.9498
					Lus10039025 [exp]	2.0	0.9446
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	3.5	0.9443
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023850 [exp]	4.9	0.9382
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	5.9	0.9317
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	7.3	0.9240
AT1G61215		BRD4	bromodomain 4 (.1)		Lus10018457 [exp]	7.7	0.8978
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	8.1	0.9113
					Lus10018313 [exp]	8.1	0.9107
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	8.4	0.9170

Compare expression of checked genes

Lus10031303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.