Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39530 62 / 4e-12 Uncharacterised protein family (UPF0497) (.1) AT2G39518 61 / 9e-12 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031874 [exp] 244 / 3e-83 AT2G39530 92 / 1e-23 Uncharacterised protein family (UPF0497) (.1) Lus10031305 [exp] 230 / 3e-77 AT2G39530 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031303 [exp] 184 / 3e-59 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1) Lus10031875 [exp] 180 / 2e-57 AT2G39530 86 / 4e-21 Uncharacterised protein family (UPF0497) (.1) Lus10031873 [exp] 108 / 2e-30 ND 47 / 4e-07 Lus10023416 [exp] 46 / 4e-06 AT2G39530 132 / 4e-39 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G040100 [exp] 87 / 1e-21 AT2G39518 79 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Potri.010G204700 [exp] 45 / 6e-06 AT2G39530 112 / 2e-31 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10031304 pacid=23151036 polypeptide=Lus10031304 locus=Lus10031304.g ID=Lus10031304.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTACCTCTTCGCAGAGCGAATCCTCGAGGACCATGGTCCTGGTCCTGAGGGTGTGCACTCTGCTCCTGATGGTGGCCACGGCTATGG TCCTGGTCTTCGACACTGCTGAGGTCCAGCTTGATCTCAGGAACTTCGTCATCACCCCCACCAAGCTCACTTTCCGGGACCTCATCACTTTCAAGTACTT AGTTGGTGTGGCAGTGATTGTAGTGGTCTACACGGTCATCCAGATTCCTTTCTCGATTCACCATTTGGCCACCGGGAACAGGCTGGCTTGCTTCCCCAAG TTCGATTTCTATGCCGACCAGGTGGTGAGCTATCTGATAGGGACAGCGGTTGGTGCCGGGTTCCTCGTTTGTGCCGAACTCAAGACAAATTTGAACAAGA TTCTCAACTCACTTGAGGAGTCAAACACACAGGGGCTCGAGGATTCGAAGGAAAATTACGATAAATTCGTCAACCATGGATTCTTGGCTTCGGCACTGGT TCTCTTTGCCTTTATTTGCACGACACTCGTGTCCGTCCTCTCTTCCTTGAACCGCAACAGCAACGAGAAGAAGTCCATCTTCGGCTAA
AA sequence Show only first row Show all	>Lus10031304 pacid=23151036 polypeptide=Lus10031304 locus=Lus10031304.g ID=Lus10031304.BGIv1.0 annot-version=v1.0 MASSSTSSQSESSRTMVLVLRVCTLLLMVATAMVLVFDTAEVQLDLRNFVITPTKLTFRDLITFKYLVGVAVIVVVYTVIQIPFSIHHLATGNRLACFPK FDFYADQVVSYLIGTAVGAGFLVCAELKTNLNKILNSLEESNTQGLEDSKENYDKFVNHGFLASALVLFAFICTTLVSVLSSLNRNSNEKKSIFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39518			Uncharacterised protein family...		Lus10031304 [exp]	0	1
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	3.9	1.0000
					Lus10002009 [exp]	4.2	1.0000
					Lus10002449 [exp]	5.2	1.0000
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	6.7	1.0000
					Lus10025056 [exp]	6.7	1.0000
					Lus10006079 [exp]	6.9	1.0000
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	7.3	1.0000
AT3G26140			Cellulase (glycosyl hydrolase ...		Lus10032312 [exp]	8.1	1.0000
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	9.2	1.0000
AT1G14220			Ribonuclease T2 family protein...		Lus10015409 [exp]	9.5	1.0000

Compare expression of checked genes

Lus10031304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.