Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39530 58 / 1e-10 Uncharacterised protein family (UPF0497) (.1) AT2G39518 55 / 2e-09 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031304 [exp] 230 / 2e-77 AT2G39518 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031874 [exp] 216 / 1e-71 AT2G39530 92 / 1e-23 Uncharacterised protein family (UPF0497) (.1) Lus10031875 [exp] 199 / 8e-65 AT2G39530 86 / 4e-21 Uncharacterised protein family (UPF0497) (.1) Lus10031303 [exp] 181 / 4e-58 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1) Lus10031873 [exp] 105 / 3e-29 ND 47 / 4e-07 Lus10023416 [exp] 51 / 7e-08 AT2G39530 132 / 4e-39 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G040100 [exp] 90 / 2e-22 AT2G39518 79 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Potri.010G204700 [exp] 42 / 9e-05 AT2G39530 112 / 2e-31 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10031305 pacid=23151136 polypeptide=Lus10031305 locus=Lus10031305.g ID=Lus10031305.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCTTCGTCGCAGAGCGAATCGTCGAGGACCATGGTCCTGGTTCTGAGGCTGAGCACTCTGTTTCTTGCGGTGGCCGCGGCTCTGG TGCTGGTCTTTGACACCGCGGAGGTCCAGCTCGATTTCAGGAGCTTCGTTGTCACGCCCACCAAGCTCACTTTCAAGGACCTCATCACTTTCAAGTACTT GCTTGCTGTGGCTGTGATTGTAGTAGTGTACACGGTTATCCAGAGTCCATTCTCGATTCACCACTTGGTCGCTGGGAAGAGGCTGGCTTGCTTCCCCGAG TTCGACTTCTATGCCGACAAGGTGGTGAGCTATCTTCTGGCAACAGCGGTTGGTGCGGGATTTCTTGTTTGTGCCGAACTCAAGACCAATCTGAACAAGA TTCTCAAGTCCCTTGAACAGTTAGACACACAGGGGCTCGAGGATTCCAAGGAAAACTACAACAAATTCCTCAACTACGGATTCCTGGCTTCGTCACTGGT TTTCTTGGCCTTCATTTGTATGACGGTCGTGTCTGTCCTCTCTTCGTTAAACCGGAACAGCAATGAGAAGAAGTCTATTTTCGGTTGA
AA sequence Show only first row Show all	>Lus10031305 pacid=23151136 polypeptide=Lus10031305 locus=Lus10031305.g ID=Lus10031305.BGIv1.0 annot-version=v1.0 MASSSSSSQSESSRTMVLVLRLSTLFLAVAAALVLVFDTAEVQLDFRSFVVTPTKLTFKDLITFKYLLAVAVIVVVYTVIQSPFSIHHLVAGKRLACFPE FDFYADKVVSYLLATAVGAGFLVCAELKTNLNKILKSLEQLDTQGLEDSKENYNKFLNYGFLASSLVFLAFICMTVVSVLSSLNRNSNEKKSIFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	0	1
					Lus10000914 [exp]	1.0	1.0000
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	2.0	0.9932
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	2.0	0.9062
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	2.4	0.9851
					Lus10020633 [exp]	3.2	0.7624
AT4G22990			Major Facilitator Superfamily ...		Lus10009314 [exp]	4.5	0.8457
AT3G22040			Domain of unknown function (DU...		Lus10007506 [exp]	6.2	0.7167
AT3G43660			Vacuolar iron transporter (VIT...		Lus10015135 [exp]	6.3	0.7099
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10035611 [exp]	7.3	0.7175
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10041807 [exp]	8.1	0.7593

Compare expression of checked genes

Lus10031305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.