Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30080 149 / 2e-44 ATZIP6, ZIP6 ZIP metal ion transporter family (.1) AT1G31260 71 / 7e-15 ZIP10 zinc transporter 10 precursor (.1) AT5G45105 69 / 2e-14 ZIP8 zinc transporter 8 precursor (.1.2) AT4G19680 67 / 8e-14 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT2G04032 64 / 2e-12 ZIP7 zinc transporter 7 precursor (.1) AT4G19690 61 / 1e-11 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT5G62160 59 / 1e-10 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1) AT1G10970 56 / 2e-09 ATZIP4, ZIP4 zinc transporter 4 precursor (.1) AT3G12750 55 / 3e-09 ZIP1 zinc transporter 1 precursor (.1) AT1G60960 55 / 3e-09 ATIRT3, IRT3 iron regulated transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040615 [exp] 68 / 1e-13 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10041647 [exp] 63 / 6e-12 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10024107 [exp] 62 / 2e-11 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10041613 [exp] 61 / 2e-11 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10006935 [exp] 56 / 2e-09 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10014063 [exp] 56 / 3e-09 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10014062 [exp] 52 / 4e-08 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10019854 [exp] 49 / 4e-07 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G074100 [exp] 165 / 1e-50 AT2G30080 360 / 2e-124 ZIP metal ion transporter family (.1) Potri.001G279300 [exp] 152 / 2e-45 AT2G30080 378 / 2e-131 ZIP metal ion transporter family (.1) Potri.015G117700 [exp] 73 / 1e-15 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.015G117900 [exp] 68 / 8e-14 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.010G135400 [exp] 67 / 2e-13 AT2G04032 325 / 4e-110 zinc transporter 7 precursor (.1) Potri.010G134300 [exp] 66 / 3e-13 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.001G160400 [exp] 65 / 1e-12 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.010G173300 [exp] 65 / 1e-12 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.008G083100 [exp] 59 / 1e-10 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.006G006600 [exp] 59 / 1e-10 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10031306 pacid=23151012 polypeptide=Lus10031306 locus=Lus10031306.g ID=Lus10031306.BGIv1.0 annot-version=v1.0 ATGTCGGCGGCCTGCCAGCTGGACTCCGCCACCGCCGCCAGAACCCTGGCCACCTGCCGGGACACGTCAGCAGCCACCCACCTGAAGCTAGCATCGATCC TGGCGATCTTCCTCACGAGCGTGATCGGGATCTCCTCTCCGGTCATCCTGGCCCGCCTCTTCCGCGGCAAGCCGCTCTACGACAAGGCCGTCTTGCTGAT CAAGTGCTTCGCCGCCGGAGTCATCCTCTCCACCTCTTTGGTCCACGTGCTTCCCGACGCCTACGCCGCCTTGGCCGACTGCGCCGTTGCCTCCGTCCAT CCATGGAAGGACTTCCCCTTCGCCGGCGGGGTGACTCTGGTCGGGTGCCTACTCGCGCTGTTGGTTGAGATTACTGCCGGCGAGCACTCCGGCCACCACG GCGGCGCCACGTGTGGGGGGGGGGGGAGAGCGGCGGTGGTGGTGGAGGAGAGTATGAGGCGGTGTTCACGTTGGAGGAGGTGGAGGAGGATGGAGAGGCG GAACCGGCGAGGGTGA
AA sequence Show only first row Show all	>Lus10031306 pacid=23151012 polypeptide=Lus10031306 locus=Lus10031306.g ID=Lus10031306.BGIv1.0 annot-version=v1.0 MSAACQLDSATAARTLATCRDTSAATHLKLASILAIFLTSVIGISSPVILARLFRGKPLYDKAVLLIKCFAAGVILSTSLVHVLPDAYAALADCAVASVH PWKDFPFAGGVTLVGCLLALLVEITAGEHSGHHGGATCGGGGRAAVVVEESMRRCSRWRRWRRMERRNRRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031306 [exp]	0	1
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10021930 [exp]	2.8	0.7272
AT5G06740			Concanavalin A-like lectin pro...		Lus10009423 [exp]	7.1	0.7444
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	13.9	0.6714
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10000366 [exp]	16.9	0.6166
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	19.2	0.6546
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10041217 [exp]	23.4	0.5660
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10040836 [exp]	24.5	0.6554
AT3G60070			Major facilitator superfamily ...		Lus10034394 [exp]	28.8	0.6430
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10020193 [exp]	29.4	0.6267
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	31.5	0.6737

Compare expression of checked genes

Lus10031306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.