Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30080 231 / 1e-76 ATZIP6, ZIP6 ZIP metal ion transporter family (.1) AT1G05300 148 / 9e-44 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 140 / 6e-41 ZIP3 zinc transporter 3 precursor (.1) AT1G31260 140 / 8e-41 ZIP10 zinc transporter 10 precursor (.1) AT1G10970 140 / 1e-40 ATZIP4, ZIP4 zinc transporter 4 precursor (.1) AT2G04032 140 / 1e-40 ZIP7 zinc transporter 7 precursor (.1) AT4G19690 138 / 3e-40 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT3G12750 137 / 1e-39 ZIP1 zinc transporter 1 precursor (.1) AT1G60960 133 / 1e-37 ATIRT3, IRT3 iron regulated transporter 3 (.1) AT4G19680 132 / 1e-37 ATIRT2, IRT2 iron regulated transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031872 [exp] 168 / 1e-53 AT2G30080 157 / 6e-47 ZIP metal ion transporter family (.1) Lus10024107 [exp] 152 / 2e-45 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10041647 [exp] 151 / 8e-45 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10041613 [exp] 150 / 1e-44 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10019854 [exp] 145 / 9e-44 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10040615 [exp] 144 / 3e-42 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10014062 [exp] 143 / 4e-42 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10006935 [exp] 135 / 3e-39 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10014063 [exp] 109 / 3e-29 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G279300 [exp] 253 / 3e-85 AT2G30080 378 / 2e-131 ZIP metal ion transporter family (.1) Potri.009G074100 [exp] 251 / 2e-84 AT2G30080 360 / 2e-124 ZIP metal ion transporter family (.1) Potri.010G134300 [exp] 156 / 4e-47 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.015G117700 [exp] 150 / 6e-45 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.015G117900 [exp] 149 / 4e-44 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.006G006600 [exp] 144 / 9e-43 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.006G006800 [exp] 144 / 1e-42 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.001G160400 [exp] 138 / 4e-40 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.018G053300 [exp] 139 / 5e-40 AT1G10970 440 / 3e-153 zinc transporter 4 precursor (.1) Potri.008G083100 [exp] 137 / 2e-39 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10031307 pacid=23151132 polypeptide=Lus10031307 locus=Lus10031307.g ID=Lus10031307.BGIv1.0 annot-version=v1.0 ATGAAGCAGAGGTTGGTGTCGCAGGTGCTCGAGATCGGGATAATATTCCACTCAGTGATCATCGGAGTAACGATGGGGACGTCGCAGAACCGGTGCACGA TCAAGCCGCTGGTGACTGCGTTGTGTTTCCATCAGATCTTCGAAGGGATGGGTCTCGGCGGCTGCATTGCTCAGGCGGGATTTAGTATGGGGACGGTAGC GTACATGTCGATAATGTTCGCTGTGACAACACCGATGGGGATCATGTTAGGTATGGCAATATTTTGGCTGACGGGATACGACGACAGCAACCCTAACGCC TTGATCATGGAAGGACTGCTCGGATCGTTATCCTCCGGGATCCTCATCTATATGGCTCTAGTTGATCTGATCGCGCTCGATTTCTTTCAGAACAAGCTAA TGAGCTCCGCTCCACGGTTGAAGAAGGCCTCCTTCATCGCCCTTCTTCTCGGCTCCACCTCCATGTCCGTCCTTGCTCTCTGGGCTTAA
AA sequence Show only first row Show all	>Lus10031307 pacid=23151132 polypeptide=Lus10031307 locus=Lus10031307.g ID=Lus10031307.BGIv1.0 annot-version=v1.0 MKQRLVSQVLEIGIIFHSVIIGVTMGTSQNRCTIKPLVTALCFHQIFEGMGLGGCIAQAGFSMGTVAYMSIMFAVTTPMGIMLGMAIFWLTGYDDSNPNA LIMEGLLGSLSSGILIYMALVDLIALDFFQNKLMSSAPRLKKASFIALLLGSTSMSVLALWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031307 [exp]	0	1
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10031273 [exp]	2.4	0.8913
AT4G37420			Domain of unknown function (DU...		Lus10013221 [exp]	15.9	0.8937
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10031500 [exp]	16.7	0.8925
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10024847 [exp]	34.2	0.8327
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	45.1	0.8193
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	67.1	0.8295
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10005746 [exp]	67.2	0.8564
AT4G02920			unknown protein		Lus10027996 [exp]	75.4	0.8163
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	79.7	0.8319
AT2G15760			Protein of unknown function (D...		Lus10019892 [exp]	88.6	0.8526

Compare expression of checked genes

Lus10031307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.