Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08590 977 / 0 iPGAM2 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) AT1G09780 961 / 0 iPGAM1 2,3-biphosphoglycerate-independent phosphoglycerate mutase 1, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031877 [exp] 1149 / 0 AT3G08590 979 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10042283 [exp] 1063 / 0 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10026370 [exp] 1062 / 0 AT3G08590 992 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142900 [exp] 1039 / 0 AT1G09780 927 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 1, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1) Potri.006G113300 [exp] 1025 / 0 AT3G08590 989 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF01676 [flax] [poplar] Metalloenzyme Metalloenzyme superfamily CL0088 [flax] [poplar] PF06415 [flax] [poplar] iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Representative CDS sequence Show only first row Show all	>Lus10031309 pacid=23151124 polypeptide=Lus10031309 locus=Lus10031309.g ID=Lus10031309.BGIv1.0 annot-version=v1.0 ATGGGAAGCTCCGGCGGAAGCGCATGGAAGCTGGCGGATCATCCGAAGCTCCCCAAGGGGAAGACGATCGCCATGATTGTATTGGACGGTTGGGGTGAGG CGAACCCAGATCCGTATAATTGCATCCACGTTGCCGAGACTCCAACCATGGATTCCTTCAAGCAGACTGCGCCTGAGAAGTGGAGACTGATTAAGGCCCA TGGAACTGCGGTGGGTCTTCCGAGCGATGATGACATGGGGAACAGTGAAGTTGGGCACAATGCTCTTGGTGCTGGACGCATCTATGCTCAAGGTGCTAAG CTTGTTGATCTTGCACTGGCATCTGGAAAGATCTTCGACGGAGAGGGATTCAAGTATATCCAGCAATCCTTCGATAAGGGAACATTGCACCTCATTGGGT TGCTGAGTGATGGTGGTGTTCACTCCAGGCTTGATCAAGTGCAGTTGTTGCTTAAAGGTGCTAGTGAGCGTGGTGTCAAAAGAGTCCGTGTTCACATCCT TACAGATGGGCGTGATGTGATAGACGGAACTAGTGTTGCCTTTGTCGAAACTCTCGAGAACGATCTTGCCAAGTTGCGGGAGAAGGGCATTGATGCGCAG GTTGCATCGGGTGGAGGTCGAATGCACGTGACAATGGATCGTTATGAGAATGACTGGGATGTGGTCAAACGAGGATGGGACGCCCAGGTTCTTGGGGAAG CGCCTCACAAGTTTAAGAACCCAGTGGAAGCTGTGAAAAAGCTAAGGGAAACTCAAACTCCCAAGGCTAACGACCAATACTTGCCGCCTTTTGTTATTGT CGACAGCAGTGGGAAGCCTGTTGGGCCGATTGTCGATGGTGATGCAGTTGTCACGTTCAACTTCCGTGCTGATCGTATGGTTATGCTTGCAAAGGCTCTC GAGTACAAGGATTTCGACAAATTCGATCGTGTGAGATTTCCTAAGATCAACTATGCTGGAATGCTCCAGTACGATGGCGAGTTGAAGCTTCCTAGCCATT ACCTTGTGTCTCCTCCAGAAATCGAGAGGACGTCCGGTGAATATTTGGTGCATAATGGCGTCCGTACATTTGCCTGCAGTGAGACGGTAAAGTTTGGTCA TGTTACTTTCTTCTGGAACGGAAATCGATCGGGTTGCTTCAACTCGGAAATGGAGGAGTACGTAGAGATACCAAGTGATGTCGGGATCACATTCAACGTT AAACCAAAGATGAAGGCTTTGGAGATTGCAGCGAAAGCACGAGACGCCATCCTCAGTGGGAAATTCCATCAGGTTCGAGTTAACCTACCGAATGGAGACA TGGTCGGACACACTGGAGATGTCGAAGCTACTGTCGTCAGTTGCAAGGCTGCTGATGAAGCCGTCAAGATGATGATCGATGCAATCGAGCAAGTGGGCGG AATCTACGTGGTCACAGCAGATCACGGCAACGCAGAGGACATGGTGAAGAGAGACAAATCCGGGAAGCCGATGCTGGACAAGAGCGGCAACGTCCAGATC CTGACCTCCCACACCCTCCAACCAGTCCCCGTTGCAATCGGTGGCCCAGGATTGGCACCAGGGGTGAGGTTCCGCAGCGATGTCCCGACAGGCGGACTGG CGAATGTCGCAGCTACCGTGATCAATCTCCATGGATTCGAAGCTCCGAGCGACTACGAGACCACCCTAATCGAAGTGGTGGATAAGTAA
AA sequence Show only first row Show all	>Lus10031309 pacid=23151124 polypeptide=Lus10031309 locus=Lus10031309.g ID=Lus10031309.BGIv1.0 annot-version=v1.0 MGSSGGSAWKLADHPKLPKGKTIAMIVLDGWGEANPDPYNCIHVAETPTMDSFKQTAPEKWRLIKAHGTAVGLPSDDDMGNSEVGHNALGAGRIYAQGAK LVDLALASGKIFDGEGFKYIQQSFDKGTLHLIGLLSDGGVHSRLDQVQLLLKGASERGVKRVRVHILTDGRDVIDGTSVAFVETLENDLAKLREKGIDAQ VASGGGRMHVTMDRYENDWDVVKRGWDAQVLGEAPHKFKNPVEAVKKLRETQTPKANDQYLPPFVIVDSSGKPVGPIVDGDAVVTFNFRADRMVMLAKAL EYKDFDKFDRVRFPKINYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGCFNSEMEEYVEIPSDVGITFNV KPKMKALEIAAKARDAILSGKFHQVRVNLPNGDMVGHTGDVEATVVSCKAADEAVKMMIDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPMLDKSGNVQI LTSHTLQPVPVAIGGPGLAPGVRFRSDVPTGGLANVAATVINLHGFEAPSDYETTLIEVVDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031309 [exp]	0	1
AT3G08780			unknown protein		Lus10014237 [exp]	2.8	0.9088
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	3.6	0.9229
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10020108 [exp]	3.7	0.9060
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	6.2	0.9077
AT1G66080			unknown protein		Lus10031356 [exp]	7.1	0.9062
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Lus10031334 [exp]	7.7	0.8987
AT5G42090			Lung seven transmembrane recep...		Lus10008267 [exp]	8.2	0.9068
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	9.4	0.9037
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037516 [exp]	10.2	0.8954
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	12.5	0.9060

Compare expression of checked genes

Lus10031309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.