Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01900 308 / 1e-102 DNAse I-like superfamily protein (.1) AT2G37440 244 / 4e-77 DNAse I-like superfamily protein (.1.2) AT2G32010 217 / 2e-65 CVL1 CVP2 like 1 (.1.2) AT3G63240 216 / 3e-65 DNAse I-like superfamily protein (.1) AT1G05470 216 / 5e-65 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G04980 210 / 7e-64 DNAse I-like superfamily protein (.1.2) AT5G65090 200 / 4e-60 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT1G34120 194 / 7e-57 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT4G18010 188 / 2e-54 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 185 / 5e-53 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031878 [exp] 281 / 1e-94 AT2G01900 152 / 1e-43 DNAse I-like superfamily protein (.1) Lus10006597 [exp] 216 / 2e-67 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 216 / 4e-65 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10008934 [exp] 206 / 6e-65 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10022074 [exp] 210 / 1e-63 AT3G63240 298 / 7e-96 DNAse I-like superfamily protein (.1) Lus10028884 [exp] 207 / 6e-63 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 207 / 1e-62 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 207 / 3e-62 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10006904 [exp] 207 / 5e-62 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041600 [exp] 348 / 8e-118 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.015G032200 [exp] 347 / 2e-117 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.010G101700 [exp] 328 / 6e-110 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G139600 [exp] 322 / 1e-107 AT2G01900 521 / 0.0 DNAse I-like superfamily protein (.1) Potri.017G074200 [exp] 218 / 1e-66 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2) Potri.008G155700 [exp] 215 / 6e-65 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.008G011000 [exp] 212 / 1e-64 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G212700 [exp] 213 / 4e-64 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 211 / 2e-63 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.010G247800 [exp] 207 / 9e-63 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10031310 pacid=23151069 polypeptide=Lus10031310 locus=Lus10031310.g ID=Lus10031310.BGIv1.0 annot-version=v1.0 ATGCTTCGGTTGGGAAACAACACCAACAACTTCGTCGCAGACTTTCCCTCCCCCATAACCACTTCTCCTCCTCCTCCCGCCCCGCCGCCGGCCGGAATCA CTCCCTCCGACGACCATGATGTTCATCAACCACATGAAGTCTACAAGCTGTTCGTCGGTTCATGGAACGTCGGCGGGATCTCACCGCCGTTGGACTTGGA CATCCGAGATTGGCTCAACCTTCATAATGACGACGCCGAAGAAGACGGCGCCGGTCCTCTTTTCCCGGACATTTATGTTCTTGGGTTCCAGGAGATTGTG CCGTTGAATGCGGGGAACATAATCCTAGGTTCAACAGAAAACATCAACAACAACAACATTGCTATGAGGTGGAACTCTATAATAGGGGCGGCTCTCAACA GAGACATTAACAACGACGTTCGGAGCAATTTCGAAGGATACGAATGCTTGGTGAGCAAACAGATGGTCGGAATATTCATCACCGTATGGATAAGGACACA CCTTCTCCAACAAGTTACCCACACCGCCGTCTCCTGCGTCGGATGTGGCCTCATGGGTCGCTTGGGTAACAAGGGATCGGTTTCGGTGAGGTTTTTGGTC GAGAAGACGAGCTTCTGCTTTGTGTGCAGCCATCTGGCGTCGGGAGGGAGAGAAGGCGACGAGAGGTACAGAAACTCTGACGCCGGCGAGATATTGTCAC GTACCAACTTCCGCCGGCCACCGGGCCACTTGCACAACCTGCCTCGCAAAATCCTACATCACGATCGAGTGGTTTGGTTGGGGGACTTGAACTACAGGAT ATACCTTCCAGAAGCCACAACTCGATTCCTTGTCCAGAAAGGAGAGTGGAATGTTCTGCTCGAGAAAGATCAGTTGAAGGCCGAGCTGAGGAGAGGTCGT GTGTTTGATGGTTGGAACGAAGGGAGTATCCAGTTTGCACCTACTTACAAGTATTGTGCTAGCTCGGGGGTTTATTACGGGTTCGACTCGCTCCCTCAGT ACTGCCATTCTCGACCTTCGAAAGGTCGCGCTCCCGCCTGGTAA
AA sequence Show only first row Show all	>Lus10031310 pacid=23151069 polypeptide=Lus10031310 locus=Lus10031310.g ID=Lus10031310.BGIv1.0 annot-version=v1.0 MLRLGNNTNNFVADFPSPITTSPPPPAPPPAGITPSDDHDVHQPHEVYKLFVGSWNVGGISPPLDLDIRDWLNLHNDDAEEDGAGPLFPDIYVLGFQEIV PLNAGNIILGSTENINNNNIAMRWNSIIGAALNRDINNDVRSNFEGYECLVSKQMVGIFITVWIRTHLLQQVTHTAVSCVGCGLMGRLGNKGSVSVRFLV EKTSFCFVCSHLASGGREGDERYRNSDAGEILSRTNFRRPPGHLHNLPRKILHHDRVVWLGDLNYRIYLPEATTRFLVQKGEWNVLLEKDQLKAELRRGR VFDGWNEGSIQFAPTYKYCASSGVYYGFDSLPQYCHSRPSKGRAPAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01900			DNAse I-like superfamily prote...		Lus10031310 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	1.4	0.9704
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	2.0	0.9608
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	6.7	0.9476
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040733 [exp]	7.3	0.9096
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	8.3	0.9570
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	8.5	0.9528
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	9.2	0.9443
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031696 [exp]	9.4	0.9415
					Lus10020157 [exp]	9.6	0.9227
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10019531 [exp]	11.8	0.9197

Compare expression of checked genes

Lus10031310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.