Plant FIBer expression Database

Lus10031311 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48430 867 / 0 Dihydroxyacetone kinase (.1)
AT3G17770 853 / 0 Dihydroxyacetone kinase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031879
[exp]
1008 / 0 AT3G17770 826 / 0.0 Dihydroxyacetone kinase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G041100
[exp]
926 / 0 AT1G48430 897 / 0.0 Dihydroxyacetone kinase (.1)
Potri.015G032500
[exp]
906 / 0 AT1G48430 887 / 0.0 Dihydroxyacetone kinase (.1)
Potri.011G011650
[exp]
101 / 3e-26 AT3G17770 98 / 6e-26 Dihydroxyacetone kinase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0245 EDD PF02733 Dak1 Dak1 domain
CL0245 PF02734 Dak2 DAK2 domain
Representative CDS sequence
>Lus10031311 pacid=23151174 polypeptide=Lus10031311 locus=Lus10031311.g ID=Lus10031311.BGIv1.0 annot-version=v1.0
ATGGCGTCCACTGCTAAGAAGCTCATCAACGACCCCAACGATGTTGTGACCGAGTTCATCGAGGGTCTTGTTGAATCATATCCTGGGATGCAATATCTGG
ATGGTTTCCCAGAGGTCAAGGTTGTGTTACGTGCTGATGTTTCTGGCGCCACAAATGATAAAGTTGCTGTCATATCAGGAGGAGGAAGTGGCCATGAACC
TGCTCATGCTGGGTTTGTTGGAGAAGGGATGCTTACGGCTGCTGTATGTGGAGATGTGTTTGCATCTCCACAAGTTGATTCAATTCTAGCTGGCATTCGA
GCTGTAACGGGTCCCATGGGATGTCTTCTAATTGTCAAGAACTATACCGGTGACCGTCTGAATTTTGGATTGGCTGCTGAGCAGGCAAAATCGGAAGGTT
ATAAAGTTGAGACCGTAATAGTTGGAGATGATTGTGCTTTACCTCCACCTCGGGGAATTGCTGGCAGGAGAGGTTTGGCAGGGACTATTCTAGTACATAA
GGTTGCCGGTGCTGCCGCAGCCGCTGGACTTTCTCTTGCTGATGTTGCGGCAGAAGCAAAGCGTGCAGCTTCATTCATTGGAACCATGGGCGTAGCATTA
TCACTCTGCACACTTCCAGGGCAAGTCACACCCGATCGTCTAGGCCCGGGAAAAATGGAACTTGGTCTTGGAATTCACGGTGAACCAGGTGCTGCTGTGG
CCGACATTCAGCCTGTCGGAGTTGTGGTCTCTCATGTACTAAAGCAAATTCTGTCTCAGGAAACTAATTACGTTCCAATAACTCGTGGCTGCCGAGTGGT
GATCATGGTCAACGGATTAGGCGCAACCCCACCAATGGAGCTAATGATTGCCGCTGGGAAAGCAGTCCCTCAATTGCAGGTTGAACATGGATTAGCTGTA
GAGAGAGTGTATACTGGGTCATTTATGACTTCTCTTGATATGGCAGGAATTTCAATTACTATAATGAAGGCGGATCAGGCGATTCTCGAACGCCTCGATG
CTGCAACCAAGGCACCATATTGGCCGGTCGGGGTAGATGGTAATCGTCCACCCGCGAAGATACCAGTTCCGCTTCCGCAATCTCCTACAGCAAGAAGCGA
TGCATCCTTGGGTCGGCCGGCCAAGCTAAGTGAACAAGGGATCATTCTTGAGGTCGCTATCGAGGCAGCAGCAAGTGCGGTAGTAAACCTTAAAGATCCC
TTAAATGAATGGGACAGCAAAGTAGGGGATGGTGATTGTGGATCAACCATGTATAGGGGCGCAACGGCTATTCTGGAGGATATGAAAAAATATTATCCTG
TGAACGATGCAGCGGAAACAATTAACGAAATGGGATCATCTATCAGCAGAGTGATGGGTGGAACAAGTGGAATAATATACACTATACTAGCCAAGGCAGC
ATACGCAAGCCTGAAAGCAACCACTCAGTCAGCTGTAACATCAAAACAATGGGCTGAAGCACTGGAAGCTTCGATAACGGCAGTGAGTAAATACGGCGGA
GCTTCTGCTGGTTACCGGACACTACTAGATGCTCTCATTCCAGCTTTGGAAGTTCTTCAGCAGAGGCTAAATACTGGGGATGATCCTATTGCTGCCTTTA
TTCTTTCTTCTGAAGCTGCATTGGTTGGTGCCGAATCAACCAAAAGCATGCTGGCACAGGCGGGCCGGTCGAGTTACGTGTCAGCGGAGATAGTAGCATC
GGTGCCGGATCCAGGAGCAATGGCTGCAGCTGCCTGGTACAGAGCCGCAGCATTGGCTGTTCGGAACACACTGCAGAGCTCTTCCCTACCCGATCCATCG
TCTGCTCCGTAA
AA sequence
>Lus10031311 pacid=23151174 polypeptide=Lus10031311 locus=Lus10031311.g ID=Lus10031311.BGIv1.0 annot-version=v1.0
MASTAKKLINDPNDVVTEFIEGLVESYPGMQYLDGFPEVKVVLRADVSGATNDKVAVISGGGSGHEPAHAGFVGEGMLTAAVCGDVFASPQVDSILAGIR
AVTGPMGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVETVIVGDDCALPPPRGIAGRRGLAGTILVHKVAGAAAAAGLSLADVAAEAKRAASFIGTMGVAL
SLCTLPGQVTPDRLGPGKMELGLGIHGEPGAAVADIQPVGVVVSHVLKQILSQETNYVPITRGCRVVIMVNGLGATPPMELMIAAGKAVPQLQVEHGLAV
ERVYTGSFMTSLDMAGISITIMKADQAILERLDAATKAPYWPVGVDGNRPPAKIPVPLPQSPTARSDASLGRPAKLSEQGIILEVAIEAAASAVVNLKDP
LNEWDSKVGDGDCGSTMYRGATAILEDMKKYYPVNDAAETINEMGSSISRVMGGTSGIIYTILAKAAYASLKATTQSAVTSKQWAEALEASITAVSKYGG
ASAGYRTLLDALIPALEVLQQRLNTGDDPIAAFILSSEAALVGAESTKSMLAQAGRSSYVSAEIVASVPDPGAMAAAAWYRAAALAVRNTLQSSSLPDPS
SAP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G17770 Dihydroxyacetone kinase (.1) Lus10031311
[exp]
0 1
AT3G17770 Dihydroxyacetone kinase (.1) Lus10031879
[exp]
1.0 0.9114
AT1G21840 UREF urease accessory protein F (.1... Lus10039022
[exp]
1.4 0.8942
AT5G47040 LON2 lon protease 2 (.1) Lus10003009
[exp]
3.7 0.8040
AT5G43830 Aluminium induced protein with... Lus10039382
[exp]
4.0 0.8575
AT2G43400 ETFQO electron-transfer flavoprotein... Lus10025584
[exp]
4.6 0.8382
AT5G21170 AKINBETA1 5'-AMP-activated protein kinas... Lus10041287
[exp]
5.5 0.8734
AT3G01090 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.... Lus10036582
[exp]
6.0 0.8136
AT5G14780 FDH formate dehydrogenase (.1) Lus10014535
[exp]
11.2 0.8535
AT5G49650 XK2, XK-2 XYLULOSE KINASE 2, xylulose ki... Lus10007234
[exp]
15.7 0.8535
AT4G08570 Heavy metal transport/detoxifi... Lus10039419
[exp]
19.6 0.8365

Lus10031311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.