Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031880 [exp] 223 / 3e-75 ND / Lus10031886 [exp] 139 / 2e-42 ND / Lus10040411 [exp] 51 / 3e-08 AT5G54740 59 / 3e-11 seed storage albumin 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G134600 [exp] 39 / 0.0006 AT5G54740 56 / 2e-10 seed storage albumin 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031312 pacid=23151019 polypeptide=Lus10031312 locus=Lus10031312.g ID=Lus10031312.BGIv1.0 annot-version=v1.0 ATGTCGACGCCAAACTACAACTGTGCACTCCGCTTCATATCATATCTAGCAGCGGCAACTCTCTTCCTCTCGGCGGCGGAAGCCGTCCGCACCACCACAG TGATCATCGACGCCTCCCCCGCTGAAAACTGGGCGTGCTCGGCGGGGAGGCTGTGGCACTGCCAGGAGTACATGAAGGATGAGGCTGTGCGACGAGACGG CGCTGGCGCCGTCATCGACGGCACCATCACAGGGTTAAGCCGCCGGCAGATTAACTTCGGGATGTGCTGCTGCAAGCTGAAACTGATGGAGGCGGCGGCG GAGACTGGGGAGGGAAACATCGTCTGCTCGGGGGTCGAGGAGGCAATGCGGGGGCTGGTGGAGGAGCAGAGGCAGCGTGGGGAAGTGATCATGGGGGATG AGGAGCTGATGAATGCATGGGGTATCGCGGAGGAGCTGCCGAGGAAGTGCGGTGTCGTTAACTCGCCGGCGAAGTGCCGTTTCAACAGCCGGATGATGAT CGCTTCCTCGTTGTGA
AA sequence Show only first row Show all	>Lus10031312 pacid=23151019 polypeptide=Lus10031312 locus=Lus10031312.g ID=Lus10031312.BGIv1.0 annot-version=v1.0 MSTPNYNCALRFISYLAAATLFLSAAEAVRTTTVIIDASPAENWACSAGRLWHCQEYMKDEAVRRDGAGAVIDGTITGLSRRQINFGMCCCKLKLMEAAA ETGEGNIVCSGVEEAMRGLVEEQRQRGEVIMGDEELMNAWGIAEELPRKCGVVNSPAKCRFNSRMMIASSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031312 [exp]	0	1
AT5G38760			Late embryogenesis abundant pr...		Lus10003046 [exp]	3.7	0.9290
AT2G19900		ATNADP-ME1	Arabidopsis thaliana NADP-mali...		Lus10012964 [exp]	8.0	0.9287
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018500 [exp]	8.7	0.9081
					Lus10018816 [exp]	11.5	0.9283
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	13.6	0.9278
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10010747 [exp]	14.1	0.9237
					Lus10031880 [exp]	15.5	0.9078
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	19.5	0.9263
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10019970 [exp]	19.9	0.9256
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	27.6	0.9248

Compare expression of checked genes

Lus10031312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.