Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73390 614 / 0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) AT1G17940 586 / 0 Endosomal targeting BRO1-like domain-containing protein (.1) AT5G14020 245 / 4e-77 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031881 [exp] 762 / 0 AT1G73390 704 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10042289 [exp] 680 / 0 AT1G73390 686 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10026368 [exp] 602 / 0 AT1G73390 613 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10012563 [exp] 306 / 6e-101 AT5G14020 486 / 9e-172 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10041527 [exp] 304 / 5e-100 AT5G14020 483 / 6e-171 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10031997 [exp] 291 / 7e-95 AT5G14020 504 / 9e-179 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10035167 [exp] 290 / 2e-94 AT5G14020 497 / 4e-176 Endosomal targeting BRO1-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G067400 [exp] 677 / 0 AT1G73390 647 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G154200 [exp] 587 / 0 AT1G73390 563 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G062000 [exp] 292 / 2e-95 AT5G14020 524 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.001G323600 [exp] 281 / 5e-91 AT5G14020 521 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Lus10031313 pacid=23151154 polypeptide=Lus10031313 locus=Lus10031313.g ID=Lus10031313.BGIv1.0 annot-version=v1.0 ATGGGATGCATAGTGTCTACACCTAAGGATACTGGTGGGAACAGGAGAAGACCTGCGAGTATCGGGGAGCTTACCGTCTATGTACCTGGGTTTCGAATAC CGAAACCATCAGATTTCTCTCTGGCTCTCGGTGACCACCTGTCGAAGAATCTAGTAGAACAGCTCTCCGCTCTAAGGACCCGGATTGTGGTTATGGCAAT TGTGTGTATGGCAGGTCAAGAAGCTCCTACTGTTACCAGGACAAGAAGAAGAGCTACACAGCATGGTGGTTCAACTTTGGCTGATCTTCATCAGGCTCTT GAAGACTACTTGCCTGTTCTTGTGGGTTTAGTTAAAGATGGTAGCCAACTACAACACAAAATCCAATTTGTATGGGTAAATCAAGAGGATGAGGCAGAGG AGACAGCAATGTCGAATGCATGGTACGAGATCTTGTCGGTCTTGCACTTGATGGCAGTACTTTCGTTATCACAGGCGAATCTGTTACTTCTCCCGAGAAC GTCTTCTGATGGTTATCAGCCAAAAGTATCAGAAGAAAGTAGGAGAGCTTCTGTTGACATATTCTTGAAGGCTGCTGGATACTTGGATTGCGCAGTTAGA CACGTTCTTCCACATTTACCCGCTGCACTGAGGAGAGACTTGCCTGTCGACCTTGTTGAAGGAGTTCTTCGAGCACTTTCCCTGCAAGCATTGGGTCAGA GTGTTGATATCCAACTTGGGATGGCAATCGATAGCGCGAAAGCCACACTTGCAGTGAAACGGAGGCTTGCTTGTGAGATGGTCAAGTACTGGCAACAGGC TCAAGATAACATAATGAACCTTCCCCTATCGAATGGCTGGGGCGAAAAGCACCGTCTTTTCATCAAATGGAAATATGTGGAAGCGAAGGCTGCTGCGTAT TACTACCACGGCTTGATCCTAGACGAAGGCAACACGGAGAAATCTCATGGGATGGCTGTAGCTGCACTGCAAGCTGCGGATGAGTACTTCAAAGAGAGTA AAAGAGCTTGTGAGGCATTCAATGCTGCCTCACCTACATCGAGCGCCAATCCACTTTGGGGCACCATGAAGTATCTATCAGAGAAAATCCCAAGAGACAC TTCCAGCAAAGTGCGGATAAATCGTGATCTCTACTCCCACGAAAAGATCATGGAGACGGCACCAACGCTGCCGGATTTCGCGCTGGCACTCAAACCGGAT GAGTACCAGCTCCCTCAGGCCGGTCCCTCGTGGGACCACGAGAACGAAGCGAATGCAAACCATCTCACGAGCTGA
AA sequence Show only first row Show all	>Lus10031313 pacid=23151154 polypeptide=Lus10031313 locus=Lus10031313.g ID=Lus10031313.BGIv1.0 annot-version=v1.0 MGCIVSTPKDTGGNRRRPASIGELTVYVPGFRIPKPSDFSLALGDHLSKNLVEQLSALRTRIVVMAIVCMAGQEAPTVTRTRRRATQHGGSTLADLHQAL EDYLPVLVGLVKDGSQLQHKIQFVWVNQEDEAEETAMSNAWYEILSVLHLMAVLSLSQANLLLLPRTSSDGYQPKVSEESRRASVDIFLKAAGYLDCAVR HVLPHLPAALRRDLPVDLVEGVLRALSLQALGQSVDIQLGMAIDSAKATLAVKRRLACEMVKYWQQAQDNIMNLPLSNGWGEKHRLFIKWKYVEAKAAAY YYHGLILDEGNTEKSHGMAVAALQAADEYFKESKRACEAFNAASPTSSANPLWGTMKYLSEKIPRDTSSKVRINRDLYSHEKIMETAPTLPDFALALKPD EYQLPQAGPSWDHENEANANHLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031313 [exp]	0	1
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030599 [exp]	6.3	0.8550
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	13.0	0.8107
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030597 [exp]	13.7	0.8436
AT1G67060			unknown protein		Lus10028484 [exp]	14.8	0.7964
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	18.2	0.8008
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10034099 [exp]	22.7	0.7788
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031881 [exp]	25.0	0.7627
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10037332 [exp]	26.6	0.8068
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10040193 [exp]	28.1	0.7644
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10030953 [exp]	33.8	0.8187

Compare expression of checked genes

Lus10031313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.