Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01940 323 / 1e-106 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) AT1G68130 319 / 3e-105 C2H2ZnF IDD14beta, IDD14alpha, ATIDD14 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) AT1G25250 294 / 4e-96 C2H2ZnF ATIDD16 indeterminate(ID)-domain 16 (.1) AT3G50700 228 / 2e-69 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G55110 224 / 3e-68 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT1G03840 226 / 4e-68 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G66730 225 / 4e-68 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G14580 224 / 6e-68 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT2G02080 225 / 1e-67 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT5G03150 224 / 2e-67 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031882 [exp] 356 / 2e-121 AT2G01940 324 / 1e-109 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10026369 [exp] 328 / 6e-109 AT2G01940 399 / 5e-137 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10010820 [exp] 228 / 8e-72 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 231 / 4e-70 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 230 / 1e-69 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10008396 [exp] 231 / 2e-69 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041356 [exp] 233 / 2e-67 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10004840 [exp] 225 / 2e-67 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10019927 [exp] 223 / 4e-67 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G033100 [exp] 454 / 1e-157 AT2G01940 431 / 1e-148 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.012G040200 [exp] 443 / 2e-153 AT2G01940 420 / 2e-144 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.010G101200 [exp] 417 / 9e-144 AT1G68130 428 / 1e-148 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.008G140400 [exp] 332 / 3e-110 AT1G68130 437 / 5e-152 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.005G027200 [exp] 239 / 5e-73 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.013G019200 [exp] 238 / 8e-73 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.002G208444 [exp] 238 / 6e-72 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.006G129300 [exp] 235 / 2e-71 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.007G028800 [exp] 234 / 4e-71 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 233 / 1e-70 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031314 pacid=23150988 polypeptide=Lus10031314 locus=Lus10031314.g ID=Lus10031314.BGIv1.0 annot-version=v1.0 ATGTTCTGTAGTAACAAGAACTCCTCTTCTTCTCCTCCTTCTGATCCTTTCTCTTCTTCTTCTTTGGATAATAATAACTGCCATGAATCTTCCTCTGTCG CCGCCGCTGCCACCTCCGCTGCTAAACGGAAGCGCCGCCCTGCCGGCACTCCAGATCCCGATGCGGAGGTGGTTTCGCTGTCACCTCGGACGCTGATGGA GTCGGACAGGTACGTGTGCGAGATATGCAACCAGGGTTTCCAGCGCGACCAGAACCTACAGATGCACCGCAGGCGCCACAAGGTGCCGTGGAAGCTTCTC AAGAGGGAGAGCCCCGTGGTTAAAAAACGGGTCTTCGTATGTCCTGAACCGAGTTGCCTGCACCACGACCCGTGTCACGCGCTGGGCGACTTGGTCGGGA TCAAGAAGCACTTCAGGAGGAAGCACAGCAACCAGAAGCAGTGGGTTTGCGACAAGTGTAACAAAGGGTACGCCGTCCAATCGGACTACAAAGCTCACCT CAAGACTTGTGGCACCCGCGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCCAGAGTGGAGAGTTTCATAGAGCACCAAGACGCATGCACCATGGGACGT CAATCACATTCCCCGAACTTTCAACAACAACAACAACAACCAACGGCTTGCTTATCTCGAACTGCCTCGAGCCCTAGCCCATCGGCCGAGACAGCTCCTT GGCCGATGCTCGTGCCATCTCCACGCCAGCATCATCATCAACAACAACCGCCTCCACATCCACCTCCACAGCTCGACCACCACCAACAACGTGGTGGTGG TGGTCGTGCTGCCACGTCAGCATTCATGTCATTGCCCACTATCAGCACAACCACCATAACTGAAAGTCGAGGTTGCGAAATTCACAACCTCGACCTCCAG CTGGCATCTTCCTCCTCAGCAGTCGCGGCAGCAGCAGCTGATCATGATGACCACTCATCAGCAGCAGATGCAGCCGCGACCCAGCTGCACCTCTCGGTCG GGTCAGTATCAAACACTAATCACCCGATCAGAGAGGTGGACGCACGAGAGGAGATAAGGCTTGCGATTGCGGAGAAGGCGTACGCGGAGGAGGTGAGGAA GGAGGCGAAGAGGCAGATACAGCTGGCGGAGGAGGAGTTCGCCAACGCGAAGAGGACACGTCAGCGGGCGCAGGCTGAGTTGGACAAGGCGGAGGCGTTG AAAGAGCACGCCATGAAGCAGATGAACACGACGATACTCCAGCTCACCTGCGCCAGCTGTCGGCAGAAGTTGCTGATGCGGCAGCCGGGGGCGGCGGCGG ATGAGAACTCGTCGTTGGTGTTGAGCTACGTGTCGTCGGGGATTACTGAGCAAGGCGAAGTGATGGAGAAAGAAGCTATAGTTTGA
AA sequence Show only first row Show all	>Lus10031314 pacid=23150988 polypeptide=Lus10031314 locus=Lus10031314.g ID=Lus10031314.BGIv1.0 annot-version=v1.0 MFCSNKNSSSSPPSDPFSSSSLDNNNCHESSSVAAAATSAAKRKRRPAGTPDPDAEVVSLSPRTLMESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLL KRESPVVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCNKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTMGR QSHSPNFQQQQQQPTACLSRTASSPSPSAETAPWPMLVPSPRQHHHQQQPPPHPPPQLDHHQQRGGGGRAATSAFMSLPTISTTTITESRGCEIHNLDLQ LASSSSAVAAAAADHDDHSSAADAAATQLHLSVGSVSNTNHPIREVDAREEIRLAIAEKAYAEEVRKEAKRQIQLAEEEFANAKRTRQRAQAELDKAEAL KEHAMKQMNTTILQLTCASCRQKLLMRQPGAAADENSSLVLSYVSSGITEQGEVMEKEAIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25250	C2H2ZnF	ATIDD16	indeterminate(ID)-domain 16 (....		Lus10031314 [exp]	0	1
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10012680 [exp]	1.4	0.8799
AT1G52190			Major facilitator superfamily ...		Lus10035860 [exp]	2.4	0.8761
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	2.4	0.8693
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	3.9	0.8350
AT5G40960			Protein of unknown function (D...		Lus10035200 [exp]	4.5	0.8110
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031883 [exp]	4.6	0.8210
AT1G52190			Major facilitator superfamily ...		Lus10025802 [exp]	7.7	0.8661
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	8.1	0.8289
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	8.5	0.8146
AT5G25170			PPPDE putative thiol peptidase...		Lus10017127 [exp]	10.4	0.6974

Compare expression of checked genes

Lus10031314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.