Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15210 112 / 2e-30 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT4G24660 109 / 2e-29 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT5G65410 109 / 6e-29 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT5G60480 105 / 1e-28 ZF_HD ATHB26, ZHD12 ZINC FINGER HOMEODOMAIN 12, homeobox protein 26 (.1) AT1G14440 106 / 1e-27 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT3G28920 103 / 2e-26 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT3G50890 102 / 2e-26 ZF_HD ATHB28, ZHD7 ZINC FINGER HOMEODOMAIN 7, homeobox protein 28 (.1) AT2G18350 102 / 2e-26 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT1G14687 94 / 2e-24 ZF_HD ATHB32, ZHD14 ZINC FINGER HOMEODOMAIN 14, homeobox protein 32 (.1) AT1G69600 95 / 7e-24 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031885 [exp] 98 / 9e-27 AT1G75240 71 / 4e-16 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10007147 [exp] 84 / 6e-19 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10010694 [exp] 83 / 1e-18 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10014302 [exp] 77 / 8e-17 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10010693 [exp] 74 / 1e-16 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10026010 [exp] 76 / 2e-16 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10015900 [exp] 75 / 2e-16 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10036753 [exp] 75 / 2e-16 AT5G15210 112 / 3e-30 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10005242 [exp] 76 / 4e-16 AT5G39760 218 / 9e-69 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G032700 [exp] 166 / 6e-52 AT1G69600 137 / 2e-40 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.012G040900 [exp] 165 / 7e-52 AT4G24660 143 / 4e-43 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.003G000400 [exp] 97 / 3e-24 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.002G035200 [exp] 88 / 8e-21 AT1G14440 169 / 2e-50 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.005G227900 [exp] 81 / 3e-18 AT2G18350 171 / 4e-52 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.007G024100 [exp] 81 / 6e-18 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.005G122500 [exp] 77 / 9e-17 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.004G126500 [exp] 76 / 3e-16 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.017G082900 [exp] 75 / 5e-16 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.010G169400 [exp] 74 / 2e-15 AT1G69600 152 / 2e-44 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10031315 pacid=23150947 polypeptide=Lus10031315 locus=Lus10031315.g ID=Lus10031315.BGIv1.0 annot-version=v1.0 ATGGAAGGAGAAGTAGACACCGAAGTGTACAAAGAATGCCTAAGGAACCATGCAGCCAGCCTCGGTAGCTACGCAACCGATGGTTGCGGGGAGTTCACCC TTTCCTTCTCTTCGTCCTCCTCTTCTTCCGTCGCCACCTCTCTCCAGTGCGCCGCTTGTGGCTGCCACCGCAACTTCCACCGCAAAGTCAACAACAACCA CAACACCAACCTCCTCCTCACCACTGCTGCCATCGAGCAGGACCATCAGATGGCATCAGTTGTGAGGAAAAACAACATGAGTAGCTACAGGGGGGACCTG GGCAGTGGCCTAGGTAGTTCTGGCAAGAGGCACAGGACCAAGTTCACGACGGAGCAGAAGGAGAAGATGACGGAATTTGCCGAGAAGATCGGATGGCGGC TGACTCGAGTCGCGAACAAGGAGGAAGATGAAGTGGAGAGATTTTGTAGAGGAGTTGGAATCAGCAGGCAGGTTTTCAAAGTTTGGATGCATAACCATAA GAACTCATCTTCTTCTTCTACTACTAATACCACCACAAATAATAACTATGATTCCTCTAATGATTATCATAATAATGTTGCTAGTTTTAGCACTAGAACC TCATCTCTTACCACTCAATGA
AA sequence Show only first row Show all	>Lus10031315 pacid=23150947 polypeptide=Lus10031315 locus=Lus10031315.g ID=Lus10031315.BGIv1.0 annot-version=v1.0 MEGEVDTEVYKECLRNHAASLGSYATDGCGEFTLSFSSSSSSSVATSLQCAACGCHRNFHRKVNNNHNTNLLLTTAAIEQDHQMASVVRKNNMSSYRGDL GSGLGSSGKRHRTKFTTEQKEKMTEFAEKIGWRLTRVANKEEDEVERFCRGVGISRQVFKVWMHNHKNSSSSSTTNTTTNNNYDSSNDYHNNVASFSTRT SSLTTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	0	1
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	1.0	0.9632
					Lus10031884 [exp]	1.4	0.9613
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	1.7	0.9546
AT4G34810			SAUR-like auxin-responsive pro...		Lus10026294 [exp]	2.4	0.9508
AT5G66440			unknown protein		Lus10041775 [exp]	3.2	0.9525
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10015153 [exp]	3.7	0.9475
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10015711 [exp]	4.4	0.9215
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	5.7	0.9468
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	6.3	0.9532
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	6.7	0.9466

Compare expression of checked genes

Lus10031315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.