Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73380 385 / 1e-130 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031887 [exp] 771 / 0 AT1G73380 387 / 8e-132 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G067200 [exp] 431 / 6e-148 AT1G73380 421 / 2e-144 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF07000 [flax] [poplar] DUF1308 Protein of unknown function (DUF1308)
Representative CDS sequence Show only first row Show all	>Lus10031316 pacid=23151082 polypeptide=Lus10031316 locus=Lus10031316.g ID=Lus10031316.BGIv1.0 annot-version=v1.0 ATGAAAAGTTTAGTGCGGTTATTTTTAACGGAACAAATCGAAAATGAAGACCACCACGGCGGCGACGGCGGAGATGGAGGAAGAGATCAAATCGGCGAGC GGAAGGTGCAAGAGAGAAGGTGCAAGAGAGTGATAGAGAGAGTCGGGAGATTACCTCCGAGCACCAACATCACTGATTCATGCAAGCGCACTCTTCTGAA GCTCGCCAACTCCGAGCTCAACTTCCTCGGCCGCTCCTCCTCATCCCTCGATTCCTCTCCTCCTCCGCCGCTCAGTGTAAACATTGGCCATTTGGAGGCA GTGGTTCAAATTCTGGAGCAGCCATTCGTGACTGGAGTTTCTCGGGTTTGCAAGAGAGTTTCTCTTGCACCGCCGGGATCTCGAAAGACGAACAACGCAC CATCCGGTGTTGTCCATGTTGATGTAGTGTGTACATTGAACAAGAAGCCAGTGTGGATCATTGTCTCGGACCGGAATCCTAGCTACGTCTACTGGCATGG CTATCGCAGGGATAAAGGTTTGAAACTGAGGATCGAACAAGTCATAGCTGCTGCTGCTCGGTCTACCAAGACGATGAAGCCTCGTTCGATCGTCCTGTTC TTCCCTCGCGGAGTTGGTGAATCGGTTAGCGAGAATCTTCAGGATGAATTCAGGGCCTGTAAGTTTCAGCTGGAGTTGGATGGATTGTATCCTGAAGCTT CTTCGTTCGAGATAAAGCTCGACACTGATGAATATCCGGTTAGTGCACAACCTAGGCCGGATCGTCTCATAGAGCTGGTTCCACAGGATGAACATCCGAA ACTAAAGCCGGATGATGGTTTTCGTTCTCTAGTCTCGGGGATGAAGACGTGGTCTAGAGAATTACGAGCTATGGACCCGTCTGATACAGGTGGTTTCCAA GGCATTGATGATGACATTCTGAATTACAGCACTACAGCATTGATTGCTATTGTATCTGGAATAAGCAACGGCTGTGCAGAGAAGCTTCTTTCCACACCGA AATCTCGACTGATACAACAGTTTAAAGGGAACACCGAGTTCGTAATGTCTGAGATTGAGAAGCCATTGCTTGTTGAGCTGGCACCTCTTCTATCCGGAAA GAGAGGCATAGTATGCCTTAGCGTTGTTTCGGAGTTCGAAGAGTTGGTATCGATGTTTGCAGGGGCTAACGAGAGGCTTCGCACTCGTAAGCTGCTCGAG TGTCTCCTGGTGGTGCCAGACAGTCCTTCGGAGCGAATGGCGGGCCTGCCAACGACGAGGAAGCTAGATTCGAAGAGCAAGATCGTGTTCGGGACCGGTG ACAGCTGGCGTGCTCCGACATTGACTGCCAACATGGCGTTCGCTCGAGCTGTGTCGCAGACGGGAATGTCGTTGTTCACCATTGGGCATCGGCCTAGGGC TTTGATCGGCGATTGA
AA sequence Show only first row Show all	>Lus10031316 pacid=23151082 polypeptide=Lus10031316 locus=Lus10031316.g ID=Lus10031316.BGIv1.0 annot-version=v1.0 MKSLVRLFLTEQIENEDHHGGDGGDGGRDQIGERKVQERRCKRVIERVGRLPPSTNITDSCKRTLLKLANSELNFLGRSSSSLDSSPPPPLSVNIGHLEA VVQILEQPFVTGVSRVCKRVSLAPPGSRKTNNAPSGVVHVDVVCTLNKKPVWIIVSDRNPSYVYWHGYRRDKGLKLRIEQVIAAAARSTKTMKPRSIVLF FPRGVGESVSENLQDEFRACKFQLELDGLYPEASSFEIKLDTDEYPVSAQPRPDRLIELVPQDEHPKLKPDDGFRSLVSGMKTWSRELRAMDPSDTGGFQ GIDDDILNYSTTALIAIVSGISNGCAEKLLSTPKSRLIQQFKGNTEFVMSEIEKPLLVELAPLLSGKRGIVCLSVVSEFEELVSMFAGANERLRTRKLLE CLLVVPDSPSERMAGLPTTRKLDSKSKIVFGTGDSWRAPTLTANMAFARAVSQTGMSLFTIGHRPRALIGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73380			unknown protein		Lus10031316 [exp]	0	1
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	3.2	0.9267
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	3.7	0.9184
AT5G14610			DEAD box RNA helicase family p...		Lus10014553 [exp]	3.9	0.9174
AT1G73380			unknown protein		Lus10031887 [exp]	6.7	0.8743
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10009186 [exp]	9.2	0.9168
AT4G23460			Adaptin family protein (.1)		Lus10028775 [exp]	9.8	0.8982
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10000148 [exp]	10.1	0.9155
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	12.6	0.9170
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10015543 [exp]	13.7	0.8739
AT1G34110			Leucine-rich receptor-like pro...		Lus10000509 [exp]	16.0	0.8982

Compare expression of checked genes

Lus10031316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.