Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54540 189 / 6e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G65690 146 / 4e-43 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 141 / 4e-41 NHL25 NDR1/HIN1-like 25 (.1) AT2G27080 89 / 7e-21 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G21130 73 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35980 54 / 1e-08 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 50 / 2e-07 NHL2 NDR1/HIN1-like 2 (.1) AT3G44220 46 / 7e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 45 / 1e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 45 / 1e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031888 [exp] 312 / 3e-108 AT1G54540 236 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 143 / 1e-41 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020783 [exp] 141 / 4e-41 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1) Lus10033705 [exp] 82 / 3e-18 AT1G65690 114 / 1e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031635 [exp] 79 / 4e-17 AT1G65690 101 / 9e-26 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10026762 [exp] 58 / 8e-11 AT2G27080 110 / 5e-31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10025548 [exp] 56 / 5e-10 AT2G27080 107 / 1e-29 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10016960 [exp] 54 / 1e-08 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10003824 [exp] 54 / 3e-08 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G154000 [exp] 218 / 4e-71 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 207 / 9e-67 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G148200 [exp] 155 / 4e-46 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.012G145500 [exp] 145 / 3e-42 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.013G135800 [exp] 107 / 4e-28 AT1G65690 112 / 4e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G158900 [exp] 102 / 5e-26 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.004G197600 [exp] 100 / 5e-25 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.019G102500 [exp] 91 / 1e-22 AT1G65690 78 / 9e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.005G166600 [exp] 64 / 4e-12 AT2G27080 114 / 2e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.009G003800 [exp] 62 / 1e-11 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10031317 pacid=23151157 polypeptide=Lus10031317 locus=Lus10031317.g ID=Lus10031317.BGIv1.0 annot-version=v1.0 ATGGCAACTTATGAAGCAACATACCATAGAATCCACCCAATCCCGCCGCCGCCGCCGGCCGCCGTCGAATCTCCGCCGTCCGGTGATCCTCCTCTATCCA ACCCCAAGCCCCCCTCCGCTCCACCGCCACCAATGAAGTCAAAGAAACCCAACACCAGATGCATGCGCAAGTGCGTGTGCTGGACGCTCCTCATCCTCCT CATCCTAGCCGTCGCCGTTGCCGCCTCCGCCGCAACAATCTACCTCGTGTTCAAACCCAAGGTCCCAAATTACTCCGTGGACAGCCTCCACCTCTCCGAC CTCAGCCTCAACGTCGACCTCTCCCTGACGGCGAAGTTCGACGTCAGGGTGACAGCCAGCAACCCAAACGATAAGATAGGGATATACTACGAGAGCGGCG GCGTCATAAGCGTGTGGTACTCCGGCACCGACTTGTGCCGGGGACGGATTCCGAAGTTCTATCAGGGGCACCGGAATGTGACTAGGCTTCGGGTCGGGTT GGCGGGGAGGAACCGGTACGGTAACGCTTTGATGTCAGCGATACAACAGCAGCAGACGACGGGGAGGATTCCGTTGGTGTTGAAGATACACGCGCCGGTG GCGGTGAAGCTCGGCGCGTTGAAGATGAGGAAAGTTAAGGTGTTGGGTGATTGTGATTTGGTTGTGGATCGGTTGAGTTTGAATAATCGGATTAATATTA AGGCTAGTGATTGTAAGTTTAAGTTGAAGCTTTGA
AA sequence Show only first row Show all	>Lus10031317 pacid=23151157 polypeptide=Lus10031317 locus=Lus10031317.g ID=Lus10031317.BGIv1.0 annot-version=v1.0 MATYEATYHRIHPIPPPPPAAVESPPSGDPPLSNPKPPSAPPPPMKSKKPNTRCMRKCVCWTLLILLILAVAVAASAATIYLVFKPKVPNYSVDSLHLSD LSLNVDLSLTAKFDVRVTASNPNDKIGIYYESGGVISVWYSGTDLCRGRIPKFYQGHRNVTRLRVGLAGRNRYGNALMSAIQQQQTTGRIPLVLKIHAPV AVKLGALKMRKVKVLGDCDLVVDRLSLNNRINIKASDCKFKLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	0	1
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10021696 [exp]	2.0	0.9393
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	2.2	0.9637
					Lus10021373 [exp]	2.8	0.9578
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	3.9	0.9382
					Lus10009436 [exp]	4.0	0.9237
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	6.2	0.9404
AT3G11920			glutaredoxin-related (.1)		Lus10029074 [exp]	6.5	0.9102
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10019711 [exp]	9.2	0.9237
					Lus10005128 [exp]	9.5	0.8585
AT3G47090			Leucine-rich repeat protein ki...		Lus10003071 [exp]	12.6	0.8739

Compare expression of checked genes

Lus10031317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.