Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24760 352 / 2e-120 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G77120 237 / 5e-75 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT1G64710 221 / 6e-69 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 218 / 3e-67 GroES-like zinc-binding dehydrogenase family protein (.1) AT4G22110 197 / 2e-59 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22430 195 / 9e-59 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 194 / 2e-58 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G42250 193 / 7e-58 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G63620 83 / 2e-17 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT5G51970 47 / 1e-05 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029759 [exp] 251 / 2e-80 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 250 / 5e-80 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 248 / 4e-79 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 245 / 6e-78 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 242 / 8e-77 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10022853 [exp] 231 / 1e-70 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004785 [exp] 209 / 1e-63 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000624 [exp] 203 / 1e-61 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004786 [exp] 201 / 7e-61 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G067000 [exp] 385 / 4e-133 AT5G24760 616 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Potri.007G108601 [exp] 271 / 3e-88 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 271 / 5e-88 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 270 / 9e-88 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 270 / 9e-88 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 269 / 3e-87 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 268 / 4e-87 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 268 / 8e-87 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 261 / 3e-84 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.014G193800 [exp] 251 / 2e-80 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10031319 pacid=23151127 polypeptide=Lus10031319 locus=Lus10031319.g ID=Lus10031319.BGIv1.0 annot-version=v1.0 ATGTCGCCGTCGCCGTCTTCCTCCGATCTCTCTTCGCCTCCGTCGGTCATCAAATGTAAAAGGATTGTTGAGAGCATTGGCGATGGGGTGACTGAGTTCA ACAAAGGGGATCATGTGCTTACAGTGTTCACTGGAGAATGCATGACATGTAAGCAGAGCACATCAGGCAAAAGCAATGTGTGCGAAGTACTGGGGCTAGA AAGGAGAGGCTTGATGCACAGTGATCAGAAGACTCGGTTTTCGATCAAAGGGAAACCGGTCTTCCATTATTGTGCTGTCTCGAGTTTCAGCGAGTATACA GTAGTCCACTCTGGGTGTGCTGTTAAAGTTAGCCCGACTGCACCTCTGGAGAAGATATGCCTTCTTAGCTGTGGAGTTGCTGCAGGCTTGGGTGCAGCTT GGAACGTTGCTGGTGTATCTGAAGGATCAACCGTGGCGATTTTCGGTCTTGGAACTGTTGGTCTCTCTGTTGCACAAGGTGCTAGACTGAAAGGTGCATC TCAAATAATTGGAGTCGACACGAACCCTGAAAAATGTGACAAAGCAAAGGCCTTTGGAGTTACAGAGTTCATCAACCCAAATGACAGCAGCGAGCCTGTT CAACAGGTGATTCAGCGAATCACCGACGGAGGAGCAGATTACTCGTTCAAATGTATAGGCGACACCGGGATGATAACAACAGCACTACAGTCATGTTGCG ATGTAAATCATTCAATTCCAAGCCTATCGCTTCTTTCGTTTCGTTATTTTCATCATCTCATGTTCCAAAACCTGTCAGGGATGGGGAATGACAGTCACTC TCGGCGTGCAAAAAACGAAACCAGAGGTATTTGCTCACTACGGCCTGTTGCTCGCCGGGAGGACACTGAAAGGGACTCTATTTGGTGGGTGGAGACCAAA GTCAGACCTCCCTTCATTAGTCGACATGTACATGAACAAGGCAAGTACAGACATCACCATCATCGCGAATCCTTGCATTCGATTCGATACAACTTTACGA TAATCTCCGCATTTTTGCAGGAAATCAAGGTCGACGAGTTCATCACGCATGACCTGCCATTCGAGGACATCAATGAAGCATTTCGGCTCATGAGAGATGG GAAATGCCTACGCTGTGTTATCCACATGCCCAAATAG
AA sequence Show only first row Show all	>Lus10031319 pacid=23151127 polypeptide=Lus10031319 locus=Lus10031319.g ID=Lus10031319.BGIv1.0 annot-version=v1.0 MSPSPSSSDLSSPPSVIKCKRIVESIGDGVTEFNKGDHVLTVFTGECMTCKQSTSGKSNVCEVLGLERRGLMHSDQKTRFSIKGKPVFHYCAVSSFSEYT VVHSGCAVKVSPTAPLEKICLLSCGVAAGLGAAWNVAGVSEGSTVAIFGLGTVGLSVAQGARLKGASQIIGVDTNPEKCDKAKAFGVTEFINPNDSSEPV QQVIQRITDGGADYSFKCIGDTGMITTALQSCCDVNHSIPSLSLLSFRYFHHLMFQNLSGMGNDSHSRRAKNETRGICSLRPVARREDTERDSIWWVETK VRPPFISRHVHEQGKYRHHHHRESLHSIRYNFTIISAFLQEIKVDEFITHDLPFEDINEAFRLMRDGKCLRCVIHMPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24760			GroES-like zinc-binding dehydr...		Lus10031319 [exp]	0	1
AT4G38050			Xanthine/uracil permease famil...		Lus10025716 [exp]	2.2	0.9184
AT4G18490			unknown protein		Lus10021779 [exp]	3.5	0.8868
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10027149 [exp]	5.0	0.8597
AT3G47570			Leucine-rich repeat protein ki...		Lus10037889 [exp]	7.7	0.8261
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	9.2	0.8978
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	9.3	0.9031
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	13.6	0.8908
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	14.5	0.8754
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	17.4	0.8970
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	23.1	0.8788

Compare expression of checked genes

Lus10031319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.