Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17700 813 / 0 ATCNGC20, CNBT1 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) AT3G17690 726 / 0 ATCNGC19 CYCLIC NUCLEOTIDE-GATED CHANNEL 19, cyclic nucleotide gated channel 19 (.1) AT4G30560 357 / 1e-111 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G57940 351 / 2e-109 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G19780 350 / 8e-109 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT2G23980 349 / 1e-108 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G15990 345 / 3e-107 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G28260 343 / 6e-107 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT2G24610 335 / 2e-103 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30360 334 / 6e-103 ATCNGC17 cyclic nucleotide-gated channel 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031891 [exp] 1462 / 0 AT3G17700 887 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Lus10022155 [exp] 362 / 1e-113 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10021461 [exp] 361 / 1e-113 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10036260 [exp] 363 / 2e-112 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10024073 [exp] 350 / 5e-109 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10037394 [exp] 349 / 5e-109 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10041662 [exp] 349 / 3e-108 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10015510 [exp] 337 / 4e-104 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10039415 [exp] 333 / 3e-102 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034000 [exp] 966 / 0 AT3G17700 905 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.012G038700 [exp] 910 / 0 AT3G17700 818 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.015G033900 [exp] 901 / 0 AT3G17700 838 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.018G097600 [exp] 354 / 6e-111 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.003G183000 [exp] 350 / 5e-109 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.018G106100 [exp] 347 / 6e-108 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.001G043900 [exp] 343 / 5e-106 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.017G067000 [exp] 338 / 6e-105 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.012G002200 [exp] 337 / 5e-104 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.009G010700 [exp] 336 / 7e-104 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031320 pacid=23151057 polypeptide=Lus10031320 locus=Lus10031320.g ID=Lus10031320.BGIv1.0 annot-version=v1.0 ATGAACGGAGAATGGAGTATTAAGCTGAGTTGGGACTCAGTCAATGGTGACCGGCCGGCTGCTCCGTTGCTCAGTCAAATAGCTTGTAATAGGAATTTTG ACATGGTTAATTATGACAAAGACGAGATACCGATGCTATCAGCTGCTCATGATTCGCAGCTGTCGGATGAGCCTGTGCATGATTCTATATACAGGGAAGT CCTTGTGAGGGCCCGTAGTGCATCGGTAGCTGTTCCTATGGATCCATACGAGAGCGCGAACCGTCTTGCAGGCTATACGGGTCCACTGCGCAGTGAAAGA AAAACACCCTTGAGTCAACTGAGTGGTCCGCTGTATGTCAGTCCCCAAACTGGAGATGTTGCACATCAGAAGCGTGATTTATCGGCAAACAAAAGTCTAG ATCAAAATGTTGAGATATTTCCTTCCTTGAAAACCACGGACCAGGACGATTGGAGGGGTGATAGTACTCATGGTGGTGCTAAGAATGAACATCTGTTGAG GTCTGGTCAATTGGGGATGTGTAGTGACCCTTACTGTACAACTTGTCCCATGTTTTACAATGCTAACATAGTAAAGCAGAAACCTTCAAGAACTTCCTTT ATTTTTGACCCTCAGTTCCATAATCATCTGTATGGTGATGCTAAAGGGTGTGCAAAGAGGTTTATGTCGTTTGTAAACCCATATATTCCTGGGGTTATGA ACCCTCATACCAAAGTTGTTCAGCAGTTTAACAAGTTTTTTGTGATCTCCTGTATTGTGGCAATATTCGTTGACCCGCTATTTTTCTTCTTGCTGTCTGT GGACCAGACTAACAAGTGCATATTGATTAATTGGCCCATGACTACAACTATTGTGGTCTTAAGGAGTGTGACTGATTTTGTATACTTATTGAACATACTC CTCCAGTTCAGGTTGGCTTATATAGCTCCTGAATCTAGAGTTGTTGGTGCTGGAGAGTTAGTTGACCATCCCAAGAAGATTGCAATGAACTACATCCGTG GAAGCTTTTTCGTCGATTTGTTCATCGTACTGCCTCTTCCTCAAATCATCATTTTGGTGATTCTACCAGATATATTGGGATCGTCAGGAGCGAATTACGC CAAAAACCTTCTACGGGCGGCAGTTCTTGTCCAATATATTCCTAGATTGTATAGGTTCTTGCCGTTTCTTGTTGGGCAGTCTTCAAGTGGCTTCATCTTT GAAACGGCCTGGGCAAACTTCTTTATAAATCTTCTCAGTTTCATGTTGGCGGGGCACGGTATTGGATCATCTTGGTATCTCTTGGGATTACAGAGGGTTA ATCAATGCCTACGTGATGCTTGCCGTCATTCTGGGATAGCAAACTGCACGGATTTCATCGACTGCGGTCATGGCGATGACTTCAGTGGGTTTAGTTCCAA TCCACAATGGAGCAACTGGACAGGCAATGTCAATGCCACTGCATGTTTCAATACACAAGATGGTAGCTTTTCTTACGGAATCTACGTCCAAGCTGTCATG CTCACGACAAAACGCAGTTTCGTCACCAGATACGTATATTCATTGTTCTGGGGGTTCCAGCAAATCAGTACTCTTGCTGGCAACCAAGTACCAAGCTATT TTGAGGCCGAAGTCCTTTTCACAATGCTCATTATCGGACTTGGTCTCTTGCTCTTTGCCTTTCTCATTGGCAATATGCAGAACTTTCTCCAGGCCCTTGG AAGGAGGAGCTTAGAAATGTCTCTGAGGCGGCGTGATGTGGATCAGTGGATGAGGCATCGACGCTTTTCGCCAGAACTAAGGAGGAAAGTGTTGGAAGCT GAACGGTATAACTGGGCAGCTACCAGAGGAGTCAATGAAGAATTACTCTTGGAAAATCTACCAGAAGATCTCCAGAGAGAAATCAGAAGACACCTCTTCA AGTTTGTGTGGATATTCGCACTGATGGACGACCATGTGCTGGACGCCATTTGCGAGAGGCTGAAGCAGATGATATACATCAAAGGCAGCGAGATCTTCTA CCACCATGGTGTCGTCGACAAGATGGTCTTCATCGTTCGTGGAACGTTGGAAAGTGTCGGCGAGGATGGCACTGTAGTCACCTTATCAGAAGGCCAAGTC TGCGGGGAGGAGCTCCTGACTTGGTGCCTCGAGCATTCTTCAGTAAGCAGAGATGGGAAGAAGATCAAGTTTCCTGGACATAGACTGATCAGCAGCAGAA TGGTTAGGTGTCTAACCAACGTAGAGGCATTCTCGCTTCGAGCTGTCGATCTCGAAGAAGTCACCAGCATCTTCACTAGGAACTTGAGGAATCCCCAAGT CCAAGGAGCCATAAGGTATGCATCACCTTACTGGAGAAGCATTGCAGCAAGACGGATCCAAGTAGCATGGAGGTATCGGCAGAAGCGGTTCAAACGAAAC GAGACTCGAAAACCGAGCCCGGTTTCGTACTATCCTCGTCCTCAGCGCTTCCATCCTCTTGCGTGA
AA sequence Show only first row Show all	>Lus10031320 pacid=23151057 polypeptide=Lus10031320 locus=Lus10031320.g ID=Lus10031320.BGIv1.0 annot-version=v1.0 MNGEWSIKLSWDSVNGDRPAAPLLSQIACNRNFDMVNYDKDEIPMLSAAHDSQLSDEPVHDSIYREVLVRARSASVAVPMDPYESANRLAGYTGPLRSER KTPLSQLSGPLYVSPQTGDVAHQKRDLSANKSLDQNVEIFPSLKTTDQDDWRGDSTHGGAKNEHLLRSGQLGMCSDPYCTTCPMFYNANIVKQKPSRTSF IFDPQFHNHLYGDAKGCAKRFMSFVNPYIPGVMNPHTKVVQQFNKFFVISCIVAIFVDPLFFFLLSVDQTNKCILINWPMTTTIVVLRSVTDFVYLLNIL LQFRLAYIAPESRVVGAGELVDHPKKIAMNYIRGSFFVDLFIVLPLPQIIILVILPDILGSSGANYAKNLLRAAVLVQYIPRLYRFLPFLVGQSSSGFIF ETAWANFFINLLSFMLAGHGIGSSWYLLGLQRVNQCLRDACRHSGIANCTDFIDCGHGDDFSGFSSNPQWSNWTGNVNATACFNTQDGSFSYGIYVQAVM LTTKRSFVTRYVYSLFWGFQQISTLAGNQVPSYFEAEVLFTMLIIGLGLLLFAFLIGNMQNFLQALGRRSLEMSLRRRDVDQWMRHRRFSPELRRKVLEA ERYNWAATRGVNEELLLENLPEDLQREIRRHLFKFVWIFALMDDHVLDAICERLKQMIYIKGSEIFYHHGVVDKMVFIVRGTLESVGEDGTVVTLSEGQV CGEELLTWCLEHSSVSRDGKKIKFPGHRLISSRMVRCLTNVEAFSLRAVDLEEVTSIFTRNLRNPQVQGAIRYASPYWRSIAARRIQVAWRYRQKRFKRN ETRKPSPVSYYPRPQRFHPLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10026109 [exp]	2.0	0.8380
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	3.5	0.8176
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	5.3	0.8760
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10025376 [exp]	11.6	0.7749
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	12.4	0.7556
AT2G19710			Regulator of Vps4 activity in ...		Lus10040542 [exp]	12.7	0.7432
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10027958 [exp]	15.7	0.7961
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	16.2	0.8348
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10012322 [exp]	16.3	0.7532
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10026559 [exp]	18.1	0.7457

Compare expression of checked genes

Lus10031320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.