Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48420 333 / 5e-112 DCD, ATACD1, ACD1, D-CDES A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1) AT3G26115 53 / 2e-07 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031898 [exp] 575 / 0 AT1G48420 584 / 0.0 A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1) Lus10036952 [exp] 53 / 2e-07 AT3G26115 452 / 7e-158 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038900 [exp] 372 / 2e-126 AT1G48420 588 / 0.0 A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10031325 pacid=23151053 polypeptide=Lus10031325 locus=Lus10031325.g ID=Lus10031325.BGIv1.0 annot-version=v1.0 ATGCCGATACTGAGCCATCGCTGTCTCATCGCCGGCATCCCTCTCATTTCTCCACCTCCGACCGCCGCCGTCAAACCATTTCTCTCAACAGCTCACTTCC TCCGCCGTCGTTCATCGTCCTCCACCGTTTCATCATCTCGCTCTGAAACAATGGAATCATCATTATCATCATCATCGGCAGCTCGGAACTCGTTGGATTT CCTGACCAGGAAACCCTACGTTCCACCGTCGTGGGCGTCGCACCTCAGTCCAATTCCATCTCACATCTTCTCACTCGCGCACTCACCCACTCCAATCCAC CGGTGGAACCTTCCCAACTTGCCTAAGGGAACCGAGGTCTGGCTGAAGCGCGATGATCTCTCCGGGATGCAGCTGAGCGGCAACAAAGTGAGGAAGCTGG AGTTCTTGATGTCCGATGCGGTGGCTCAGGGGGCTGATTGCGTGGTTACCGTCGGTGGGATTCAGAGTAACCACTGCCGTGCTACTGCTGTTGCAGCGAG GTACCTCGGCCTTGATTGCCATCTCATACTTCGCACTTCCAAGGTCGTTGTGGATCAGGATCCTGGATTGATAGGGAACTTGCTTGTGGAGAGATTAGTT GGAGCTCATGTTCATCTTATTTCGAAAGAAGAGTATGCACACATTGGGAGTATGGCACTTGCTGAGTTGTTGAAAGAAAAGCTGATGAAGGAAGGAAGAA AGCCATATGTTATCCCCGTCGGCGGATCGAACTCGCTGGGAACATGGGGTTATATCGAAGCAATCAGGGAAATCGAGCAGCAGGTTGAGGCGGGTGATGG CAGGATCAATTTCGACGATATTGTCGTGGCATGTGGCAGCGGAGGCACGATAGCTGGTCTTGCTTTGGGATCACATCTCGGAGGATTGAAAGCAAAAGCG AAAGGTCTTGGCTACGCTATGAACACCTCCGAAGAGATCCAATTTGTTAAGGAAGTTGCTGCAGCCACCGGTATCGTCCTCGACCCAGTCTACAGCGGTA AAGCTACCTACGGGATGCTGAAAGATATGAAAGACAATCCACTGAACTGGGAAGGCAGAAAGATCCTATTCATACACACGGGTGGCCTCCTCGGACTCTA CGACAAATCGGACCAGCTCTCACCATTGATGTCTGGAAGCTGGAGCCGGATGGACGTCCACGAGTCCGTAACAAGGCAGGAAGGCATTGGCAAAATGTTC TGA
AA sequence Show only first row Show all	>Lus10031325 pacid=23151053 polypeptide=Lus10031325 locus=Lus10031325.g ID=Lus10031325.BGIv1.0 annot-version=v1.0 MPILSHRCLIAGIPLISPPPTAAVKPFLSTAHFLRRRSSSSTVSSSRSETMESSLSSSSAARNSLDFLTRKPYVPPSWASHLSPIPSHIFSLAHSPTPIH RWNLPNLPKGTEVWLKRDDLSGMQLSGNKVRKLEFLMSDAVAQGADCVVTVGGIQSNHCRATAVAARYLGLDCHLILRTSKVVVDQDPGLIGNLLVERLV GAHVHLISKEEYAHIGSMALAELLKEKLMKEGRKPYVIPVGGSNSLGTWGYIEAIREIEQQVEAGDGRINFDDIVVACGSGGTIAGLALGSHLGGLKAKA KGLGYAMNTSEEIQFVKEVAAATGIVLDPVYSGKATYGMLKDMKDNPLNWEGRKILFIHTGGLLGLYDKSDQLSPLMSGSWSRMDVHESVTRQEGIGKMF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031325 [exp]	0	1
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031898 [exp]	2.0	0.8141
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10013966 [exp]	10.4	0.7782
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10015177 [exp]	13.4	0.7615
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10031498 [exp]	16.9	0.7630
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	29.5	0.7786
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	41.7	0.7029
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037744 [exp]	52.5	0.7500
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10013167 [exp]	57.8	0.7490
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037745 [exp]	60.8	0.7542
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10006954 [exp]	68.0	0.7304

Compare expression of checked genes

Lus10031325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.