Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38290 240 / 2e-81 Peptidyl-tRNA hydrolase family protein (.1.2) AT5G16140 237 / 3e-80 Peptidyl-tRNA hydrolase family protein (.1.2) AT5G19830 174 / 7e-56 Peptidyl-tRNA hydrolase family protein (.1) AT1G18440 160 / 2e-49 Peptidyl-tRNA hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031901 [exp] 300 / 6e-105 AT5G16140 333 / 1e-116 Peptidyl-tRNA hydrolase family protein (.1.2) Lus10014589 [exp] 178 / 6e-57 AT5G19830 316 / 2e-110 Peptidyl-tRNA hydrolase family protein (.1) Lus10042977 [exp] 162 / 7e-51 AT1G18440 345 / 6e-121 Peptidyl-tRNA hydrolase family protein (.1) Lus10032093 [exp] 167 / 2e-50 AT3G27460 282 / 8e-93 SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2) Lus10032480 [exp] 150 / 1e-45 AT1G18440 332 / 5e-115 Peptidyl-tRNA hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G098100 [exp] 275 / 2e-95 AT5G38290 348 / 3e-122 Peptidyl-tRNA hydrolase family protein (.1.2) Potri.001G005000 [exp] 177 / 6e-57 AT5G19830 327 / 4e-115 Peptidyl-tRNA hydrolase family protein (.1) Potri.012G061100 [exp] 161 / 3e-50 AT1G18440 343 / 2e-119 Peptidyl-tRNA hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01195 [flax] [poplar] Pept_tRNA_hydro Peptidyl-tRNA hydrolase
Representative CDS sequence Show only first row Show all	>Lus10031327 pacid=23151042 polypeptide=Lus10031327 locus=Lus10031327.g ID=Lus10031327.BGIv1.0 annot-version=v1.0 ATGGTTGCAGGATGTGTTGGGGAGGTGCCGATCCTGTTGGCGAAGCCACAAGCTTACATGAATTTCAGTGGCGAATCGGTTGGACCTCTTGCTGCATACT ATCAAGTGCCCCTTCGTCATATTCTATTGATATACGATGAGATGAGCTTGCCGAATGGTGTTATGAGACTTCAGCCAAAAGGTGGCCATGGCCATCATAA CGGTGTCAAGAGCGTGATCGACCATTTAGATGGATGCCGACAGTTCCCTCGATTATGCATCGGCATCGGGAACCCACCGGGGACGATGGACATGAAGGCT TTCCTACTACAGAGATTCAGCCCTGCCGAGCGAACTCAGATCGATATAGCGACGGAGCAAGGGGTTGAAGCTGTGACCAACTTGGTGCTCAATGGATTCA CCCAAAAGATTACCAGATTCAATCTCAGCCAAAAATACAAGTATCACAAAGTGTAG
AA sequence Show only first row Show all	>Lus10031327 pacid=23151042 polypeptide=Lus10031327 locus=Lus10031327.g ID=Lus10031327.BGIv1.0 annot-version=v1.0 MVAGCVGEVPILLAKPQAYMNFSGESVGPLAAYYQVPLRHILLIYDEMSLPNGVMRLQPKGGHGHHNGVKSVIDHLDGCRQFPRLCIGIGNPPGTMDMKA FLLQRFSPAERTQIDIATEQGVEAVTNLVLNGFTQKITRFNLSQKYKYHKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38290			Peptidyl-tRNA hydrolase family...		Lus10031327 [exp]	0	1
AT2G42190			unknown protein		Lus10031232 [exp]	4.2	0.8904
AT5G16140			Peptidyl-tRNA hydrolase family...		Lus10031901 [exp]	8.0	0.9020
AT2G34960		CAT5	cationic amino acid transporte...		Lus10018691 [exp]	8.4	0.8388
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	9.6	0.9035
AT3G24590		PLSP1	plastidic type i signal peptid...		Lus10034925 [exp]	10.1	0.8234
AT3G29185			Domain of unknown function (DU...		Lus10032999 [exp]	10.6	0.8960
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	12.6	0.9023
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10040937 [exp]	14.1	0.9007
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	14.9	0.9022
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10007648 [exp]	17.6	0.8412

Compare expression of checked genes

Lus10031327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.