Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73450 399 / 2e-132 Protein kinase superfamily protein (.1) AT1G73460 399 / 3e-132 Protein kinase superfamily protein (.1) AT3G17750 390 / 2e-129 Protein kinase superfamily protein (.1) AT2G40120 286 / 1e-94 Protein kinase superfamily protein (.1) AT4G03175 182 / 5e-59 Protein kinase superfamily protein (.1) AT4G24740 121 / 2e-33 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT5G35980 122 / 3e-32 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G13350 115 / 1e-29 Protein kinase superfamily protein (.1.2) AT4G32660 112 / 3e-29 AME3 Protein kinase superfamily protein (.1.2.3) AT3G53570 112 / 4e-29 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031902 [exp] 427 / 3e-143 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10042297 [exp] 422 / 8e-141 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 419 / 1e-140 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10028283 [exp] 296 / 2e-97 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10040203 [exp] 289 / 2e-93 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10009542 [exp] 124 / 1e-32 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 124 / 1e-32 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10036878 [exp] 119 / 1e-31 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 117 / 1e-30 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G039700 [exp] 407 / 2e-135 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 403 / 6e-134 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.008G069000 [exp] 296 / 8e-97 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.010G188400 [exp] 296 / 1e-96 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.013G075300 [exp] 128 / 3e-34 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.006G244400 [exp] 122 / 6e-33 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G079900 [exp] 119 / 9e-32 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.019G043400 [exp] 120 / 1e-31 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.006G213400 [exp] 117 / 5e-31 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.015G085700 [exp] 113 / 1e-29 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031328 pacid=23151147 polypeptide=Lus10031328 locus=Lus10031328.g ID=Lus10031328.BGIv1.0 annot-version=v1.0 ATGCAGTCCATTACAATCCAGTGTCTGGAAGCGCTTCAGTTCTTACATGGTCTTGGCCTTATCCACTGTGATTTGAAACCCGAGAACATATTAGTGAAAA GCTACAGTAGATGCGAGGTGAAAGTCATCGATCTCGGAAGCAGCTGTTTCGAGACGGATCACTTGTGCTCATACGTCCAATCTAGATCCTATCGAGCACC AGAGGTCATCCTAGGCCTTCCGTACGATAAAAAGATAGACGTCTGGTCACTTGGGTGCATCTTGGCCGAGCTTTGTACTGGCAATGTCCTCTTCCAAAAT GATTCACCGGCAACTCTACTTGCGCGAGTTATTGGAATTATTGGCTCCATTGATCGAGAAATGTTGGCGAAAGGACGGGATACTTATAAGTACTTCACCA AAAATCACATGCTTTACGAACGAAATCAGGAGACGAACCGACTAGAGTATCTGGTACCGAAGAAGACATCTCTGGCTCACCGATTGCCAATGGGTGACCA TGGCTTCATTGATTTCGTTAGGCATTTGCTTGAAGTAAACCCTTCAAAACGCCCTTCTGCTGCCGAGGCTTTGAAGCACCCATGGCTGTCGTTCCCTTAT GAACCCATATCGGCGTAA
AA sequence Show only first row Show all	>Lus10031328 pacid=23151147 polypeptide=Lus10031328 locus=Lus10031328.g ID=Lus10031328.BGIv1.0 annot-version=v1.0 MQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDVWSLGCILAELCTGNVLFQN DSPATLLARVIGIIGSIDREMLAKGRDTYKYFTKNHMLYERNQETNRLEYLVPKKTSLAHRLPMGDHGFIDFVRHLLEVNPSKRPSAAEALKHPWLSFPY EPISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73450			Protein kinase superfamily pro...		Lus10031328 [exp]	0	1
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	3.9	0.8337
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10040851 [exp]	6.5	0.8162
AT1G23890			NHL domain-containing protein ...		Lus10030849 [exp]	9.4	0.7518
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	11.0	0.7678
AT1G11240			unknown protein		Lus10018438 [exp]	13.4	0.7961
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	14.3	0.8141
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	14.7	0.8079
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10026767 [exp]	15.4	0.7759
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	21.8	0.7775
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	23.0	0.7738

Compare expression of checked genes

Lus10031328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.