Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73460 629 / 0 Protein kinase superfamily protein (.1) AT1G73450 602 / 0 Protein kinase superfamily protein (.1) AT3G17750 533 / 4e-174 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031902 [exp] 1463 / 0 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10042297 [exp] 1086 / 0 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 966 / 0 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G039700 [exp] 931 / 0 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 907 / 0 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031329 pacid=23150994 polypeptide=Lus10031329 locus=Lus10031329.g ID=Lus10031329.BGIv1.0 annot-version=v1.0 ATGACGGACTCGAATTCAGTGGACGTGATCCTAGTGTTTCTGCGGAGAAACCGGTTCACTAGAGCTGAGGCAGCTTTACGCAGTGAGATTGACAGTCACG CTGATCTGAATGGATTCTTTCAGAAGCTTACTATTGACAGCAAGGAGCCAGGGGAAGTTTTAGAAGAGCAGAATGGGAGAAGACCAGTGACTAATGCTCA GGGCTATGGTGATGGTTGTGAAGTTTCTAAAGAACTTATAGTTAAGGAGATAGAGTGCAGTACTCACGGAAATGGGTCTGAGGGAAGATGGAAAGCTTCG GATTTGACCGAGGATCGCAGTGTAAAGCCCAGTGAAACAGTTTGTGGGAATGATTCTCAGGATACTGTCCTAGATTTATATTCTTGGAAACCTCTCTCTA ACAGTGGTCCTCATCCTTACAAGACTGATGGAACTAGTACAAGCAACTTCTCTGAAAGAACAGAGCTATCTAAAGAGGATGCCACCTCAAATGTGAAGAA AAATGCATGGCAGGGAAGTAATAGTGGTTCTCTGATCCCTGAGTCTAAGAGTCGTAAAGTTCAGACGAGTGATCAGATCGAGTTCGGTCAGCAAGTTAAA ACTACATTCTCATATCCTGCTGACAACACATGGTCTGGACCTGAGCAGCCAACAACTTCTTCAGGGCACACATGGCAAGAATGTTCTGTGAAGACTGTAT TACCATTCACTAAGGTGGATGAATCCACTAGTTATGACCCTACTGCTAATGCTTCAGAAAGGAAAAGGGAGAAAAAGAAAGCCGATACAACCGATGTAAG GATTGCCATCAAAGAACAGGTGGATGAAGTTGGAAGAGCTTTATTCTTTGGGAAGTCACAAGGGAGTACTGAACCAAAGATTTTAGGCACGTCAGGTTCT ATTGCATCTGATAACCCTAGAGAAGATTTTCCGAGGCTGCCACCTGTTAGACTTAAGTCGGAAGACAAAATTTTGAATGTCAACTGGCAGGAGAAGTTTG AGCGTGATAAGCCAGGGACCAAGCTTAACACTGCTGATAGTTCTTTCCTTATGGGGTCATATCTTGATGTTCCTATTGGACAAGAAATCATCTCCTCAGC TGATGACTCAGGTGGAAAAAGAATTGCAGGAGGCAACTGGCTTTCCGTGAGTCAGGGAATCACAGAGGACACATCTGACTTGGTTTCTGGCTTTGCCACT GTGGGGGATGGATTGACCCAGTCAATTGACTACCCAAACGAGTATTGGGATTCTGATGAGTACGAAGATGATGATGATGTTGGGTACACGAGACAACCTA TAGAGGACGAGGCTTGGTTTCTTGCTCATGAAATTGATTATCCCAGTGACAATGAGAAAGGAACAGGACATGGGAGTGTCTCAGACCCTCAGGAAAGAGG TCCATCCAAAGATGAGGATGATGATCAGTCTTTTGCCGAGGAAGACTCGTACTTCTCTGGGGAAAAATATTTCCAGTCGAACAATGTTGAACCTGTTACA ACTTCAGATGATCCTGTTGGACTGTCAGTTACTGAAATTTATGGGAGGACGCATGAACATGACTTGATGGCACAATATGATGGGCAACTGTTTGATGTGG AGGAATTAAGTTTGATGCGCAGTGAACCTGTTTGGCAGGGTTTCGTCACACCAACAAATGAGTTGGTCATGCTAGGAGATGGGAAAGGGCTCAGCGATTC TGGTAGGGCATGTTTGGACGATGTTGGTATGGATGATGATCAGCATGGTTCAGTTCGATCAATTGGTGTTGGCATTAACAGTGATGCTGCTGATTTTGGT AGTGAAATTCGTGAAAGTGTAATTGGTGGTAGCAGTGAAGGGGATCTAGAGTACTTTCGTGATAATGATGTTGGGTTTTATAGACCAAGTGGCCAAGACC CATATAAGAAATATGTTGATAAACAAAGTAAGGATAAAATCAAGGCTAGCAAACAAGACTCAGCTAACTTTGCGATTGATAAACTCACTTATAGTCAACA TAGAACTCAGACAGAGGGAGGTTTTTCATTTCCACCTCCAAAGGGGGACGACCAGGCTGTCCAGGCAGCGTCTAGTAAGCCGATGTGGTCTAACAAGTCT GATGCTGTTATAGCTGATGAAAGCAGTGACCATTTGTATGCCTTGACAATGCCTGATGACATGCTAGCTGGATGGAGGCAGAAAAGTAGTAGTTCTTCAC CTGCCAAAAGTTCTAAGGAAGCAAATAGTGCTCATGCTTCTGGATCTATAGATTCAACGCCCTCTACACTTTCACATTATGGGTATGCTGAGCAAGAGCG TGCCAAGAAAGAGAGTGCAGAGACTAATGGTGTAGGGGAAGAAGAACCTGGGGTCTCACTTGAGGATGAAGAGGCAGTTGCTGTTCAAGAGCAAATAAGG CAAATCAAAGCACAAGAAGAAGAATTCGAAACTTTCAACCTGAAGATCGTGCATAGGAAAAACAGGCATGCCTATTATTTGCTTGTTTGA
AA sequence Show only first row Show all	>Lus10031329 pacid=23150994 polypeptide=Lus10031329 locus=Lus10031329.g ID=Lus10031329.BGIv1.0 annot-version=v1.0 MTDSNSVDVILVFLRRNRFTRAEAALRSEIDSHADLNGFFQKLTIDSKEPGEVLEEQNGRRPVTNAQGYGDGCEVSKELIVKEIECSTHGNGSEGRWKAS DLTEDRSVKPSETVCGNDSQDTVLDLYSWKPLSNSGPHPYKTDGTSTSNFSERTELSKEDATSNVKKNAWQGSNSGSLIPESKSRKVQTSDQIEFGQQVK TTFSYPADNTWSGPEQPTTSSGHTWQECSVKTVLPFTKVDESTSYDPTANASERKREKKKADTTDVRIAIKEQVDEVGRALFFGKSQGSTEPKILGTSGS IASDNPREDFPRLPPVRLKSEDKILNVNWQEKFERDKPGTKLNTADSSFLMGSYLDVPIGQEIISSADDSGGKRIAGGNWLSVSQGITEDTSDLVSGFAT VGDGLTQSIDYPNEYWDSDEYEDDDDVGYTRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVSDPQERGPSKDEDDDQSFAEEDSYFSGEKYFQSNNVEPVT TSDDPVGLSVTEIYGRTHEHDLMAQYDGQLFDVEELSLMRSEPVWQGFVTPTNELVMLGDGKGLSDSGRACLDDVGMDDDQHGSVRSIGVGINSDAADFG SEIRESVIGGSSEGDLEYFRDNDVGFYRPSGQDPYKKYVDKQSKDKIKASKQDSANFAIDKLTYSQHRTQTEGGFSFPPPKGDDQAVQAASSKPMWSNKS DAVIADESSDHLYALTMPDDMLAGWRQKSSSSSPAKSSKEANSAHASGSIDSTPSTLSHYGYAEQERAKKESAETNGVGEEEPGVSLEDEEAVAVQEQIR QIKAQEEEFETFNLKIVHRKNRHAYYLLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73460			Protein kinase superfamily pro...		Lus10031329 [exp]	0	1
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	3.3	0.9294
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	8.5	0.9162
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	9.3	0.9269
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10009816 [exp]	10.6	0.9264
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10007793 [exp]	11.0	0.9268
AT3G22270			Topoisomerase II-associated pr...		Lus10039002 [exp]	11.7	0.8934
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	12.0	0.9243
					Lus10004294 [exp]	14.9	0.9190
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	16.0	0.9060
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10003385 [exp]	17.3	0.8897

Compare expression of checked genes

Lus10031329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.