Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02061 346 / 6e-117 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G14590 340 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 334 / 7e-113 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 326 / 2e-105 unknown protein AT4G15970 285 / 1e-93 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28700 204 / 2e-62 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 200 / 1e-61 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28695 195 / 6e-59 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 166 / 4e-48 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G70630 47 / 1e-05 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031903 [exp] 710 / 0 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 348 / 3e-118 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 344 / 1e-116 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 326 / 5e-110 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 322 / 3e-109 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 324 / 3e-108 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 313 / 2e-104 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 302 / 6e-100 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041975 [exp] 208 / 6e-66 AT1G14590 196 / 1e-61 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029200 [exp] 382 / 1e-131 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G037300 [exp] 380 / 4e-131 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 363 / 2e-124 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 360 / 2e-122 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G112600 [exp] 215 / 9e-67 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 213 / 9e-66 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 205 / 5e-62 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 199 / 2e-60 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G166000 [exp] 45 / 6e-05 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.014G042700 [exp] 42 / 0.0006 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10031330 pacid=23151180 polypeptide=Lus10031330 locus=Lus10031330.g ID=Lus10031330.BGIv1.0 annot-version=v1.0 ATGACCGGCGATCAGCTTCAGGGGATCAAAAACATCGGCGGCAGGGGCAAAAAGATTCAGCAGAATTCTTCTTACTCCGGATTGCCGCAATTCCTCCTCC TCCGGCGGCGGAGCCTGGAAGTATCGGCGGCGGTCTTCATCGGAATCACCATGTGCTGTTTGTTTCTCTACCGGTCTCTGTACGACTCTTCCACCTTCTC GGCCGGGAAGTTTATCCCCAGTTCATTTGTTCCGGTTTCCAAACGTGGGCCGTTCCCGGCGGACTGGTCGGAGTTCTCTTCTCCGGTCCCGGAAAGCAGC GATCCAGAGCTAATCCGAGTACTGAAGCTCGCAGCCGCAACGTCAACGGACTCAAATAGTCAACTAATCCCTCCGACTACGGTGATCCTGACGACGCTGA ACTCTGCATGGGCGGAGCCAGGGTCGGTCCTTGACCTGTTCCTAGAGAGCTTTCGAGCCGGGAACGGAACTCGAGACCTCGTCAAGCACTTGGTGATCGT GTCGCTTGACCAGAAGGCTCACCGACGGTGTACGGCGGTGCATCCGCATTGCTACGCGCTGACGACGCCAGGGGTTAACTTCACCGGGGAGGCGTCGTTC ATGACTCATGAGTATTTGCTCATGATGTGGCGTCGTATTGACTTCTTGGCTTCTGTCTTGCGCTTGGGATACGACATCGTTTTCACGGACGCAGACATAA TGTGGCTAAGAAACCCATTCCCGCACTTTGACGAATCGGCCGATTTCCAAATCGCATGCGACCGTTACTGGCGCAAATCCCCGACCGACCGCCGCAACAG TCCCAACGGAGGGTTCACCTACGTCCGGTCCAACGTCCGGACCCTCCAGTTCTACCGGTTTTGGTACTACTCGAGGCAATACTACCCTAAAATGCACGAT CAGGACGTGCTCAACAAGATCAAATTCGACCCTTTCATCGACTCCATTGAGCTGCGTATGAGGTTCCTGGACACTGCTCGTTTTGGCGGATTCTGCGAAC CCGCCAAAGACCTCAGTATGGCGTGCACCATGCACGCCAACTGTTGTGTGGGGCTCAAACATAAGATCCATGATCTTAATGTTGTGCTCCAGGATTGGAA GCACTACTTGGCCTTGCCTCGTGACTCGAGGGCTTCGAGGTCCTTTACTTGGCGGGCGCCTCAGAGGTGCAGGTATGTTGGTGTCGGTTTGAACTAA
AA sequence Show only first row Show all	>Lus10031330 pacid=23151180 polypeptide=Lus10031330 locus=Lus10031330.g ID=Lus10031330.BGIv1.0 annot-version=v1.0 MTGDQLQGIKNIGGRGKKIQQNSSYSGLPQFLLLRRRSLEVSAAVFIGITMCCLFLYRSLYDSSTFSAGKFIPSSFVPVSKRGPFPADWSEFSSPVPESS DPELIRVLKLAAATSTDSNSQLIPPTTVILTTLNSAWAEPGSVLDLFLESFRAGNGTRDLVKHLVIVSLDQKAHRRCTAVHPHCYALTTPGVNFTGEASF MTHEYLLMMWRRIDFLASVLRLGYDIVFTDADIMWLRNPFPHFDESADFQIACDRYWRKSPTDRRNSPNGGFTYVRSNVRTLQFYRFWYYSRQYYPKMHD QDVLNKIKFDPFIDSIELRMRFLDTARFGGFCEPAKDLSMACTMHANCCVGLKHKIHDLNVVLQDWKHYLALPRDSRASRSFTWRAPQRCRYVGVGLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	0	1
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	1.4	0.9531
AT5G50375		CPI1	cyclopropyl isomerase (.1.2)		Lus10038969 [exp]	1.7	0.9407
					Lus10033509 [exp]	2.8	0.9306
					Lus10026715 [exp]	3.5	0.9392
AT3G21710			unknown protein		Lus10039666 [exp]	3.9	0.9402
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	4.0	0.9513
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10004480 [exp]	4.2	0.9161
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	4.5	0.9289
AT1G52140			unknown protein		Lus10006040 [exp]	5.3	0.9406
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015518 [exp]	5.5	0.9179

Compare expression of checked genes

Lus10031330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.