Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17850 1492 / 0 Protein kinase superfamily protein (.1) AT1G48490 1375 / 0 Protein kinase superfamily protein (.1.2.3) AT5G62310 974 / 0 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G45160 669 / 0 Protein kinase superfamily protein (.1.2) AT1G30640 281 / 2e-82 Protein kinase family protein (.1) AT3G23310 279 / 2e-81 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G14350 276 / 1e-80 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT5G09890 274 / 3e-80 Protein kinase family protein (.1.2) AT2G20470 269 / 4e-78 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G33080 265 / 2e-77 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031906 [exp] 1955 / 0 AT1G48490 1358 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10027196 [exp] 978 / 0 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 974 / 0 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005470 [exp] 704 / 0 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021176 [exp] 274 / 2e-80 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10011814 [exp] 274 / 3e-80 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10042650 [exp] 269 / 1e-78 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2) Lus10005707 [exp] 271 / 4e-78 AT5G09890 853 / 0.0 Protein kinase family protein (.1.2) Lus10033911 [exp] 268 / 1e-77 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G035600 [exp] 1723 / 0 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.012G044700 [exp] 1691 / 0 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G129200 [exp] 1008 / 0 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.012G127800 [exp] 1001 / 0 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G263000 [exp] 774 / 0 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G167800 [exp] 275 / 3e-80 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 274 / 9e-80 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.011G157000 [exp] 273 / 2e-79 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.002G125800 [exp] 268 / 3e-78 AT5G09890 828 / 0.0 Protein kinase family protein (.1.2) Potri.014G028900 [exp] 266 / 3e-77 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031332 pacid=23151170 polypeptide=Lus10031332 locus=Lus10031332.g ID=Lus10031332.BGIv1.0 annot-version=v1.0 ATGGTGTTCAAGAACAAGCTCTTCTTCTCGTCGAAGAAGTCGTCATCGGATGCATCAAGTCCGACCGATGGTGGTGGATCTTCCAACAGTCCTCGATCCA TCGGGTCGAACTCCCCGATCCGGAGCAGCGAGAAGAAGAAGTCTAAGTCGTCTTCGTCTTTCTCGTCCTCGTCGAAGGACAACAGCCCCAGCTTTTCCTC CGCGGGTGCCGCGGCGGGGGCGGCCGGGTGTAAGCAGGTTCAGGTGAAGGATGGGCTGAAGAAGAAGGAGAGCGTCGTGAAGGGGAAAGAGAGTGTTCAA TTGATCGGTAAGGCTGCTTCTCCTGCTCATCATCCTAAGTCTCAGCCGCAAACGCCTGTTAAGCAAGGCGGAGGCGGAGGAGGCTTCTCTGCTTCGGTAC TTGGTTCTACTTCTGCTTCACCTTCCGCTTCAGGGTCTAAGTTGAGGAAGGCTTTGGGGAGTGGTAAGGAGGATGCGTCGTCTGTGTCTCCGATATTGGC TTCTTCGTTGGGGTTGAATAAGATAAAGACACGGTCAGGGCCATTGCCTCAGGAGAGTTTCTTTGGTTATAGAGGGGATAAGGGGTCTGGGGTGCTTGGT TCCAGTAATTTGTCGAGGCCTGGTGGGGGGGATGGCGGATTCCGTTCGAATTCGGTGAAGAAGGAGGATGGTACTGGAAAGGGTAGGATGACAGGGTTTC AGGACCGCAGTGGTAAAGCCGTTGATACTAGCAGCAATTGGGATCGGGTGTCTTCTGGTAGTGGAGCGCAGACTAGAGAGGTTACTCCAAATCCGCAGCC AGGGATGAACTTGGACAATGGGGAACCATCTAACGATGCAGGTCGGAATGAGTCATCCTGGGGTCGTTCTGGTGGTGTGAGAAGTTCGGATGTTTTTACA CCAGAGGAGTCTGAGTCGCCACGTCTCCAAGCTATCCTACGTCTAACTAGTGCACCAAGAAAGAGATTTCCCTCTGATATAAAAAGTTTTTCTCATGAAC TCAATTCCAAAGGCGTGCGCCCATTCCCCTTTTGGAAGCCTCGTGGACTGAATAATGTGGAGCAAGTATTGGTTGTTATACGAGGAAAGTTTGACAAGGC AAAGGAAGAAGTGAATTCGGATCTGGCTATCTTTGCAGCTGATCTTGTTGGAATCCTTGAAAAGAATGCAGAAAGTCATCCTGAATGGCAGGAAACTATT GAGGACTTGTTGGTCTTGGCCAGGAGTTGTGCTATGCAATCACCTGGAGAGTTTTGGCTTCAATGTGAAAGTATAGTCCAAGATTTGGATGACAGACGCC AAGAACTCCCTCCAGGAACGCTGAAGCAACTTCATACTAAAATGCTTTTCATTCTGACTAGGTGTACAAGACTTTTGCAGTTCCACAAAGAAACTGGACT TCCCGATGATGAGAATATTTTTCAACTGCGTCAATCTAGGGTCTTACAAGTACACTCCGCAGAGAAACGCCTTCCTCCAGGTGCTGGAAGGGGCATGAAA AGCTCCACAGCTTCAAAAGTTGCAAAAGGGACTTCAGTGACGAAATCGTACAGTCAAGAACAACACGGGCGAGGTTGGAACCGAGAGCCATTGGTACTGC CTGCAAACTTTCTTTCTCCCACTGAGGCTTCCATTAATGTTGAGTCTCCTGGAGGTCGAGATAGGATGGCTTCCTGGAAAAAGCTTCCATCACCTGCTGC AAAAGGTCCAAAGGAAATTGCTTCACCTAAGGATCAAAATGAGGTAAGGGCTGATCCTTTGAAAGTGCCTAGCAACACTAAAGGGATTTCTGATATCGAT CTGCCTGCTGCTAAGCCATCTGAGGTCCCCACAGTGAAACTTGAACATTCTGCGAAGCACCAACATAAAGTTTCTTGGGGATACTGGGGTGACCAAAATC CTGCAGATGAAAATTCAATTATTTGTCGAATTTGCGAGGAAGAGGTTCCAACTTCATATGTTGAAGACCATTCAATAATATGTGCGATTGCAGATCGTTA TGATCAGAAAGGTCAAGGTGTGAATGAGCGCCTTTCAAAAATTGCAGAAACTCTTGAGAAAATGATGGAGTCTTTTGCACAGAAGGATATCCAACCTGCT CTAGGGAGCCCTGATGTAGCAAAGGTGTCAAATTCTAGTGTTACTGAAGAGTCCGACATTCCATCTCCCAAGCTAAGTGACTGGTCTAGAAGAGGATCTG AAGACATGCTCGATTGTTTTCCTGAAGCTGATAACTCGCCATTCACGGATGACATGAAGGGCTTGCCATCCATGTCATGCAGAACACGTTTTGGTCCAAA ATCTGATCAGGGGATGGCCACTTCATCTGCTGGTAGCATGACTCCTAGATCTCCATTATTGACACCAAAGAACAGCCAGATAGACTTGCTTCTTGCTGGA AAAGGTGGTTATCCAGAGCATGATGACCTTCCTCAGGATGATGGTTATCTGTTTTATTTTGCTAAGAGTACTGCTTGTTTGATACAGATGAATGAACTAG CTGATATTGCAAAATGTGTGTCTACTATGCCTTTGGAGGATGAGCGTTCCGTGCCCTATTTATTATCCTGCCTTGAGGACCTGAGGGTTGTTATTGACAG AAGAAAGTTTGATGCTCTTACTGTGGAAACTTTTGGGGCAAGGATTGAGAAACTTATACGAGAGAAGTATTTGCAGCTCTGTGAGCTAGTGGAAGATGAG AAGGTTGATATAGGAAACACTGTGATCGATGAAGATGCTCCCTTGGAAGATGATGTAGTTAGGAGCCTGAGAACAAGCCCAATACACTCTTCGAAGGACC GCACATCAATTGATGACTTTGAGATAATGAAGCCAATCAGTCGCGGGGCATTTGGGCGGGTATTCCTGGCTAAGAAAAGAACGACTGGAGATCTTTTTGC CATAAAGGTCCTAAAGAAGGCTGATATGATACGCAAGAATGCTGTTGAGAGTATACTAGCAGAACGCGATATTCTAATTTCCGTGCGCAATCCATTTGTG GTTCGTTTCTTCTATTCGTTTACTTGTCGTGAGAACTTGTACCTTGTGATGGAGTATTTAAACGGAGGCGACTTGTATTCATTATTACGTAATATGGGCT GCTTAGATGAAGACGTTGCTCGGGTCTATATAGCCGAAGTCGTACTTGCATTGGAATATCTACACTCATTGCGCGTGGTTCATCGTGATCTGAAGCCTGA TAATCTACTCATTGCACACGATGGTCATATCAAGTTAACAGATTTCGGGCTTTCGAAGGTCGGGCTCATCAACAGCACAGATGACTTGTCTGGTCCAGCG GCTGGTGGAACTTATATGCTTGTGGACGACGAACCTGAACTGTCGACTTCAGATCAACAAGAAAGGAGGAAGAAACGTTCTGCTGTGGGCACACCCGACT ATTTGGCACCAGAGATTCTTTTGGGAAGAGGACACGGCTTTACTGCTGATTGGTGGTCTGTGGGCGTCATTTTGTTCGAACTCATTGTTGGTATTCCTCC TTTCAATGCAGAGCATCCTCAGATAATATTCGACAACATTCTCAATCGGAAGATACCGTGGCCCGAAGTACCTGACGAAATGAGCCCCGAAGCTCGAGAT ATTATCGATAGATTTTTAACAGAAGATCCTCATATGAGACTCGGAGCCAGAGGTGCATCAGAGGTAAAGCAACACGTGTTCTTCAAAAACATCAACTGGG ACACACTGGCAAGGCAAAAAGCTGCATTCGTGCCCGCTTCAGACAGCGCTCTCGACACGAGCTACTTCACAAGCCGGTACACACGGAGCAGGGAGATGAA TGTGGAGGTCTCGCAGAGTTCGATTCTGAATCTTTCCCAGCTCGCGTCGATCAACTACGATCTTCTATCAAAGGGTTGGAAGGATGATCCTCCTACAAGC TCATGA
AA sequence Show only first row Show all	>Lus10031332 pacid=23151170 polypeptide=Lus10031332 locus=Lus10031332.g ID=Lus10031332.BGIv1.0 annot-version=v1.0 MVFKNKLFFSSKKSSSDASSPTDGGGSSNSPRSIGSNSPIRSSEKKKSKSSSSFSSSSKDNSPSFSSAGAAAGAAGCKQVQVKDGLKKKESVVKGKESVQ LIGKAASPAHHPKSQPQTPVKQGGGGGGFSASVLGSTSASPSASGSKLRKALGSGKEDASSVSPILASSLGLNKIKTRSGPLPQESFFGYRGDKGSGVLG SSNLSRPGGGDGGFRSNSVKKEDGTGKGRMTGFQDRSGKAVDTSSNWDRVSSGSGAQTREVTPNPQPGMNLDNGEPSNDAGRNESSWGRSGGVRSSDVFT PEESESPRLQAILRLTSAPRKRFPSDIKSFSHELNSKGVRPFPFWKPRGLNNVEQVLVVIRGKFDKAKEEVNSDLAIFAADLVGILEKNAESHPEWQETI EDLLVLARSCAMQSPGEFWLQCESIVQDLDDRRQELPPGTLKQLHTKMLFILTRCTRLLQFHKETGLPDDENIFQLRQSRVLQVHSAEKRLPPGAGRGMK SSTASKVAKGTSVTKSYSQEQHGRGWNREPLVLPANFLSPTEASINVESPGGRDRMASWKKLPSPAAKGPKEIASPKDQNEVRADPLKVPSNTKGISDID LPAAKPSEVPTVKLEHSAKHQHKVSWGYWGDQNPADENSIICRICEEEVPTSYVEDHSIICAIADRYDQKGQGVNERLSKIAETLEKMMESFAQKDIQPA LGSPDVAKVSNSSVTEESDIPSPKLSDWSRRGSEDMLDCFPEADNSPFTDDMKGLPSMSCRTRFGPKSDQGMATSSAGSMTPRSPLLTPKNSQIDLLLAG KGGYPEHDDLPQDDGYLFYFAKSTACLIQMNELADIAKCVSTMPLEDERSVPYLLSCLEDLRVVIDRRKFDALTVETFGARIEKLIREKYLQLCELVEDE KVDIGNTVIDEDAPLEDDVVRSLRTSPIHSSKDRTSIDDFEIMKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFV VRFFYSFTCRENLYLVMEYLNGGDLYSLLRNMGCLDEDVARVYIAEVVLALEYLHSLRVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPA AGGTYMLVDDEPELSTSDQQERRKKRSAVGTPDYLAPEILLGRGHGFTADWWSVGVILFELIVGIPPFNAEHPQIIFDNILNRKIPWPEVPDEMSPEARD IIDRFLTEDPHMRLGARGASEVKQHVFFKNINWDTLARQKAAFVPASDSALDTSYFTSRYTRSREMNVEVSQSSILNLSQLASINYDLLSKGWKDDPPTS S

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	0	1
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	1.0	0.9820
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10014370 [exp]	2.4	0.9339
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	2.6	0.9141
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	2.8	0.9374
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	3.5	0.9176
AT5G22780			Adaptor protein complex AP-2, ...		Lus10020522 [exp]	4.0	0.9219
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	4.1	0.8932
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	4.5	0.9071
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	5.7	0.8765
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	6.5	0.9001

Compare expression of checked genes

Lus10031332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.