Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17860 103 / 1e-24 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G48500 79 / 6e-16 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3) AT1G70700 47 / 1e-05 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT5G13220 42 / 0.0002 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) AT1G19180 41 / 0.0004 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT4G14720 41 / 0.0009 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) AT4G14713 41 / 0.001 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031907 [exp] 449 / 2e-151 AT3G17910 378 / 5e-125 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Lus10017991 [exp] 226 / 9e-70 AT3G17860 189 / 3e-56 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10041986 [exp] 212 / 8e-65 AT3G17860 174 / 4e-51 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G044900 [exp] 164 / 3e-46 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.015G035800 [exp] 157 / 1e-43 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 84 / 9e-18 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 78 / 1e-15 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.005G214300 [exp] 45 / 9e-05 AT4G14720 153 / 1e-43 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.003G068900 [exp] 42 / 0.0006 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.018G033700 [exp] 42 / 0.0007 AT4G32570 191 / 9e-57 TIFY domain protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10031333 pacid=23151159 polypeptide=Lus10031333 locus=Lus10031333.g ID=Lus10031333.BGIv1.0 annot-version=v1.0 ATGGAGCGGGATTTCATGGGATTGGGGTCGTCAATCCACCTGACGACGACGACTGTGAAAGCAGAGGCTGGCGATTCCACCTCCGCCGCCGCAGGCAAGG ACTCCGGGATGCTTCTCCTTTTCTTCTTCGACATCGACGACGACGACTGTGAAAGCAGAGGCTGCCGATTCCTCCTCCGCCGCCGCAGGCAAGGATTCCG TGATATGCTTGTTTCGAATAGAGCTTCTATGCGGATTCAGGTTCGAAATGGGTCTATGATTAATAATATGAGGAACTCAGGAGCTCATCAGTGGTCATTT TCAAACAAAGTTTCAGCTGTTCCGCAGTTCTTGTCGTTTCAGACTGCTCCTGATCAAGAGAACCCGAGGAGGAGTATTTTCGACCCGGTAGCTTCGTCGT CAAGTTTCTTGTCCATCTCCAATGCCGATGCTTTCGACTCTGCTAACCGAAGAGGTTCTTCTTCTATTATGCAGAAAATCTGGAACTTTGAAAATAAAGA TGAAAGCAGCCGTCGAGCTCGTCCGGTCATTGATGCATTTCCAGTCGGCTGCTCCAAGGATATTAGAACATTCCCTCTCTCGAATCGGCAGCAGCATCAG CCATTTCCTGTTTCAATGAGCACCCCAAGTCTGCAGTCTCATTTTACTTCCACTGTACACAGTGGTTACTATGTGAACTCTATGGCCACTCAACAACTCG GTGGAGTTCCAATAGCTGCACCTGTTATTGGTACTACTGAGCTCAGGAACAGCCCCAACTTCTCTGCCCCTTCAGCTCAGTTGACCATCTTTTATGCTGG TTCGGTGTGTGTGTACGACGACGTTTCTCCCGAACAGGCCCAAGCTATTATGTCCATGGCAAGAACCGATTCATCTGCACCGCAGACGACAACGTTTACT CCCACAACTTTGCATACCCAGCCTGCTATCCATAACCATCTTGCTACAGATGATCACATTGTTCGTAACAGACCGAGTCAAACTCCTCCAGGCTCTAGCA CTGCCAGCCCCGTGTCAGTAAGCTCGAGTACTAACAACGAATCCCGAACAGCACGATCGCCGGTAGCATCGACTAGCATCCACAGTTCTTCTATCCCGAG CAGCTCCTCTCGGCCTGCTTCTGCCGCTCCCATACCTGCATCAGTCGGCCTACCTCAGGTCCGTATACCCCAAGCTCGCAAGGCGTCGTTGGCCCGATTT CTGGAGAAGCGCAAGGAAAGGGTGACGAGTACAGCATCTCCTTATTACGACATCAGTAAGAAATCTGCAGAAGGCCATGTCTGTGTCTAA
AA sequence Show only first row Show all	>Lus10031333 pacid=23151159 polypeptide=Lus10031333 locus=Lus10031333.g ID=Lus10031333.BGIv1.0 annot-version=v1.0 MERDFMGLGSSIHLTTTTVKAEAGDSTSAAAGKDSGMLLLFFFDIDDDDCESRGCRFLLRRRRQGFRDMLVSNRASMRIQVRNGSMINNMRNSGAHQWSF SNKVSAVPQFLSFQTAPDQENPRRSIFDPVASSSSFLSISNADAFDSANRRGSSSIMQKIWNFENKDESSRRARPVIDAFPVGCSKDIRTFPLSNRQQHQ PFPVSMSTPSLQSHFTSTVHSGYYVNSMATQQLGGVPIAAPVIGTTELRNSPNFSAPSAQLTIFYAGSVCVYDDVSPEQAQAIMSMARTDSSAPQTTTFT PTTLHTQPAIHNHLATDDHIVRNRPSQTPPGSSTASPVSVSSSTNNESRTARSPVASTSIHSSSIPSSSSRPASAAPIPASVGLPQVRIPQARKASLARF LEKRKERVTSTASPYYDISKKSAEGHVCV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	0	1
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	3.2	0.9758
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	4.6	0.9751
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	5.5	0.9755
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	5.7	0.9730
AT3G17910		EMB3121, SURF1	SURFEIT 1, EMBRYO DEFECTIVE 31...		Lus10031907 [exp]	6.6	0.9572
AT1G03910			unknown protein		Lus10035558 [exp]	8.0	0.9359
AT5G11420			Protein of unknown function, D...		Lus10005474 [exp]	8.7	0.9543
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	8.9	0.9669
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	9.5	0.9680
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	9.5	0.9703

Compare expression of checked genes

Lus10031333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.