Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17880 364 / 4e-124 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT4G22670 291 / 9e-95 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT3G51030 114 / 7e-31 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT5G39950 103 / 1e-26 ATTRXH2, ATTRX2, ATH2 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) AT1G59730 102 / 5e-26 ATH7 thioredoxin H-type 7 (.1) AT1G45145 100 / 1e-25 LIV1, ATTRX5, ATH5 LOCUS OF INSENSITIVITY TO VICTORIN 1, thioredoxin H-type 5 (.1) AT1G19730 99 / 4e-25 ATTRX4, ATH4 thioredoxin H-type 4, Thioredoxin superfamily protein (.1) AT5G42980 99 / 7e-25 ATTRXH3, ATTRX3, ATH3 THIOREDOXIN H3, thioredoxin H-type 3, thioredoxin 3 (.1) AT3G08710 96 / 1e-23 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) AT1G69880 96 / 1e-23 ATH8 thioredoxin H-type 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032227 [exp] 299 / 9e-98 AT4G22670 403 / 2e-138 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10024590 [exp] 290 / 3e-94 AT4G22670 394 / 9e-135 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10000802 [exp] 113 / 3e-30 AT3G51030 165 / 5e-54 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10024293 [exp] 112 / 8e-30 AT3G51030 162 / 4e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10041799 [exp] 112 / 1e-29 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014277 [exp] 111 / 2e-29 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10028349 [exp] 111 / 2e-29 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10036696 [exp] 107 / 3e-27 AT1G59730 127 / 2e-38 thioredoxin H-type 7 (.1) Lus10014186 [exp] 103 / 2e-26 AT3G08710 192 / 3e-64 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G036000 [exp] 402 / 1e-138 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.001G118900 [exp] 296 / 6e-97 AT4G22670 333 / 3e-111 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.003G114000 [exp] 282 / 2e-91 AT4G22670 335 / 5e-112 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.012G045000 [exp] 249 / 6e-80 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.005G232700 [exp] 110 / 2e-29 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.002G030000 [exp] 110 / 2e-29 AT3G51030 160 / 3e-52 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.007G018000 [exp] 109 / 7e-29 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.006G110100 [exp] 101 / 1e-25 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.016G138800 [exp] 99 / 1e-24 AT3G08710 208 / 1e-70 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.017G076700 [exp] 99 / 1e-24 AT5G39950 168 / 7e-55 Arabidopsis thioredoxin h2, thioredoxin 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10031334 pacid=23151015 polypeptide=Lus10031334 locus=Lus10031334.g ID=Lus10031334.BGIv1.0 annot-version=v1.0 ATGGACGCAGCTCAAGTTGCTGAGCTAAAGGGATTCATCGACGAATGCAAGTCGAACCCCGGAATTCTTCACGATCCATCTCTGCTCTTCTTCAAATCAT ATCTCCAAAGCTTGGGCGCCAAGCTCCCGCGCGAAGTCAAATCGGAAACAGGAGAGGCTGAAATGTCTGGTTCTGATGATGAAATTGTTGAATCGGATAT CGAATTGGACAATGCTGATGTCGTGGAGGCCGATAACGATCCCCCACAGAAGTTGGGGAACTTCACGTCTCCAGTGACAGACGAGAGCCGGGATGCTGCT CAGGAAGAGAAAGCAAAAGCCATGGATGCACTCTCTGAAGGCAGGCTTAGTGAAGCAGTAGATCATCTTACAGAAGCCGTCCTGTTGAATCCGGTTTCAG CTATATTATATGCTTCGAGAGGTAGCGTCTACATTAAAATGAAGAAACCAAATGCTGCGATACGAGATGCAAATGCTGCATTGGAGGTGAACCCAGACTC AGCAAAAGCATACAAAGTACGAGGGATGGCGAAGGCTCTGTTGGGCCAGTGGGAAGAAGCAGCAAATGATCTTCACATCGCGTCAAAGCTGGACTACGAC GAGGAAATCGGTTTATATCTGAAGAAGGTGGAATCAAATGTGAACAAAATCAAAGAGCATCACAAGAAGTATGACCGCCTACGGAAAGAAAGAGACTTGC GGAATGCTGAACGAGAGAGAAAGCGTCAAGCTGAAGCTCGGGAACGAGAAGCATTGTCTGCTCTAAAAGAAGGTAAATGTTTCTGCATCTGCCTCGTGTT TCAATCTCTGATTGCAAATCGTTCTGATCGTTGTTCTGCCACTGGTGTTATGGTTTCTTGGTTGACAAGCTATCTGAATGATTTAGAACAATTGATATTT CTTGGACATAGTCTTACGTTTCCTGCTCTACCTTGTCAGGTCATGGGGATCCACTCAACCAGCGAACTCGAGACCAAACTGAACGCAGCAACTAAGGCTT CTCGGCTCGCGATCCTGTATTTCACAGCAACCTGGTGCGGTCCGTGCCGCTTCATCTCTCCCCACTTCACAAGCCTGGCCGAGAAGTACCCGAAAGTCGT GTTCCTGAAAGCCGACATCGACGAGGCCAGAGATGTCGCAGGGCGCTGGAACGTCAGCAGTGTCCCGGCTTTCTTCTTCGTCAAGAAAGGGAAGGAAATC GACAAGGTCGTCGGAGCCGATAAGGATGGACTGGAAAAGAAGCTTCAGCAACACGCTGTTTAA
AA sequence Show only first row Show all	>Lus10031334 pacid=23151015 polypeptide=Lus10031334 locus=Lus10031334.g ID=Lus10031334.BGIv1.0 annot-version=v1.0 MDAAQVAELKGFIDECKSNPGILHDPSLLFFKSYLQSLGAKLPREVKSETGEAEMSGSDDEIVESDIELDNADVVEADNDPPQKLGNFTSPVTDESRDAA QEEKAKAMDALSEGRLSEAVDHLTEAVLLNPVSAILYASRGSVYIKMKKPNAAIRDANAALEVNPDSAKAYKVRGMAKALLGQWEEAANDLHIASKLDYD EEIGLYLKKVESNVNKIKEHHKKYDRLRKERDLRNAERERKRQAEAREREALSALKEGKCFCICLVFQSLIANRSDRCSATGVMVSWLTSYLNDLEQLIF LGHSLTFPALPCQVMGIHSTSELETKLNAATKASRLAILYFTATWCGPCRFISPHFTSLAEKYPKVVFLKADIDEARDVAGRWNVSSVPAFFFVKKGKEI DKVVGADKDGLEKKLQQHAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Lus10031334 [exp]	0	1
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031877 [exp]	2.4	0.9252
AT1G66080			unknown protein		Lus10031356 [exp]	2.4	0.9274
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10020108 [exp]	3.5	0.9045
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10009389 [exp]	4.2	0.8888
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009677 [exp]	7.1	0.8995
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	7.1	0.9104
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031309 [exp]	7.7	0.8987
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10003961 [exp]	8.8	0.8821
AT2G29900		PS2	Presenilin-2 (.1)		Lus10035137 [exp]	9.6	0.8687
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10040418 [exp]	11.8	0.8906

Compare expression of checked genes

Lus10031334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.