Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17910 400 / 5e-137 EMB3121, SURF1 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) AT1G48510 216 / 4e-65 Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1.2) AT1G18280 73 / 7e-15 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G73560 58 / 6e-10 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G73550 57 / 7e-10 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT1G70250 49 / 8e-06 receptor serine/threonine kinase, putative (.1) AT5G13900 40 / 0.0007 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031907 [exp] 577 / 0 AT3G17910 378 / 5e-125 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Lus10024591 [exp] 56 / 6e-09 AT1G62790 100 / 2e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10032228 [exp] 54 / 1e-08 AT1G70250 90 / 1e-23 receptor serine/threonine kinase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045200 [exp] 402 / 8e-138 AT3G17910 388 / 5e-135 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Potri.001G119000 [exp] 49 / 1e-06 AT1G62790 90 / 1e-23 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.013G131500 [exp] 44 / 4e-05 AT5G13900 122 / 2e-36 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.003G113900 [exp] 43 / 9e-05 AT1G70250 73 / 9e-16 receptor serine/threonine kinase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02104 [flax] [poplar] SURF1 SURF1 family
Representative CDS sequence Show only first row Show all	>Lus10031335 pacid=23150942 polypeptide=Lus10031335 locus=Lus10031335.g ID=Lus10031335.BGIv1.0 annot-version=v1.0 ATGGCGACGAGAAGCTACGGATTCATACTCTTCCTACCGTTGCTCCTCTTATATTCTCCAATCCGGAACGCGGACTGCCAGAGCCTGGACGATTTGGTGA AGACGTACGGCGACGCGCTGACGAACGGCAGCGATTCATCGTCGTCGGCGGGGCTACGGAGCGGCTTGGCGCTGATCGCGCATCCGGAGAAGGCGAAGTG TTTGCAGAAGCTGGCGCCGTGCAAGGAGTTCATCCATTTCGAAGGGAAGCCGCCGGCGACGTGTTGCGATCCGATCGCCGAGTTGGTCGGGAACGATACG GAGGAGTGTCTGTGTATTTTCAACAGCGAGGATTTGCTTCATACCGCGAATCTGACGAAGGAGGAGGCGGTTTCGATGGCGACGATGTGTGGGTCCAAGC TTGATTTGTCCAGCTGCCCCGCCGACTCCGCGAGTGCGCCTAGCGGGTCGGGTACTTCCACCGAGAGCATCTCATTACCTCCGATTTCACTCGACAAGAT CCCAAAACGCGGGAGAATATTTACAGAGCCGGATGTCAAATTCACGATGGCTATGGCGGCAGCTTCCATTTCCAAAACCCTAACCAGCAGATCAGTTCTC CTGAGAGATCACTACTGCCACCGCATCCTCCTCTATTCTTCACACTACAGCGCTGATTCCAGCGCCGCTGCCGGCGTTCATCTTTCGTCCACCCCTCCAC CTCAAGAACAAGCTAACGGAGGAAAAAGGTGGTCGAGATGGCTTCTTTTCCTTCCTGGAGCTATGACATTCGGGCTTGGGAGCTGGCAGATCGTCAGAAG GGAGGAGAAGATGAAGGTGCTCGAGCATAGACAGAAGAGATTGGGCCTGGAGCCTGTCAAGTTGAACGATCCTTCTCCATTAAATAAACAACTTGAGGAA CTGGAATTCAGAAGGGTTTCCTGCAAAGGAGTTTATGATGAAGATAGGTCTATATATGTTGGTCCGCGTTCGAGGAGTATCTCAGGAGTGACAGAGAATG GCTTCTACGTTGTCACTCCCCTCGTGCCAGTTCCTGGCAACCCTGAAAGTGTGAAGTCTCCCATTTTAGTGAATAGAGGATGGGTTCCTCGAATTTGGAA AGAACGATCCTTCGAAGCTTCGTCAAACCCCAAACAGCTCCCTCAACCCGATCCATCCATCCTCACAGCTCAAGAGACTGAAACCAGCAGCTCGAGATGG CGGTTTTGGTCAAAGAAGCAGCAGCCACAAACTACCAAGGAGCAAAAACCTTCCATCAATCCCGTAGAAGTAGTTGGAGTGATCCGGGGAAGTGAAAACC CTAGTGCTTTCGTTCCCGCAAATGATCCAAACTCCGGCCAGTGGTTCTACGTCGACGTTCCTGCAATCGCTACTGCGTGTGGGCTCCCGGAGGATACCAT ATACGTGGAGGACGTCCACGAGGATGTTAACCCGAGCTGCCCTTACCCTGTTCCGAAAGATGTCTCTACTTTGATCCGTAGCTCAGTCATGCCACAAGAC CACCTGAACTATACATTGACATGGTATTCTCTGTCTGCTGCTGTTACATTCATGGCTTTCAAACGGCTAAAGCAAAAGCAAACTCGACGATAG
AA sequence Show only first row Show all	>Lus10031335 pacid=23150942 polypeptide=Lus10031335 locus=Lus10031335.g ID=Lus10031335.BGIv1.0 annot-version=v1.0 MATRSYGFILFLPLLLLYSPIRNADCQSLDDLVKTYGDALTNGSDSSSSAGLRSGLALIAHPEKAKCLQKLAPCKEFIHFEGKPPATCCDPIAELVGNDT EECLCIFNSEDLLHTANLTKEEAVSMATMCGSKLDLSSCPADSASAPSGSGTSTESISLPPISLDKIPKRGRIFTEPDVKFTMAMAAASISKTLTSRSVL LRDHYCHRILLYSSHYSADSSAAAGVHLSSTPPPQEQANGGKRWSRWLLFLPGAMTFGLGSWQIVRREEKMKVLEHRQKRLGLEPVKLNDPSPLNKQLEE LEFRRVSCKGVYDEDRSIYVGPRSRSISGVTENGFYVVTPLVPVPGNPESVKSPILVNRGWVPRIWKERSFEASSNPKQLPQPDPSILTAQETETSSSRW RFWSKKQQPQTTKEQKPSINPVEVVGVIRGSENPSAFVPANDPNSGQWFYVDVPAIATACGLPEDTIYVEDVHEDVNPSCPYPVPKDVSTLIRSSVMPQD HLNYTLTWYSLSAAVTFMAFKRLKQKQTRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17910		EMB3121, SURF1	SURFEIT 1, EMBRYO DEFECTIVE 31...		Lus10031335 [exp]	0	1
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10031704 [exp]	8.7	0.9251
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10022510 [exp]	10.4	0.9239
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	10.7	0.9165
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	17.3	0.9214
AT5G54970			unknown protein		Lus10032643 [exp]	21.3	0.9157
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10015597 [exp]	22.6	0.9181
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Lus10020290 [exp]	25.4	0.9102
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	27.8	0.9172
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10015039 [exp]	28.9	0.8993
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001926 [exp]	29.4	0.9102

Compare expression of checked genes

Lus10031335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.