Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17830 448 / 1e-153 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 368 / 1e-122 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT2G22360 294 / 1e-94 DNAJ heat shock family protein (.1) AT4G39960 289 / 2e-92 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 207 / 4e-61 GFA2 gametophytic factor 2 (.1) AT1G28210 168 / 6e-47 ATJ1 DNAJ heat shock family protein (.1.2) AT5G22060 133 / 5e-34 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 115 / 8e-28 ATJ3 DNAJ homologue 3 (.1.2) AT5G25530 107 / 3e-25 DNAJ heat shock family protein (.1) AT5G01390 94 / 8e-21 DNAJ heat shock family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031908 [exp] 914 / 0 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10023122 [exp] 369 / 5e-123 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 367 / 5e-122 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10023148 [exp] 284 / 1e-90 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 284 / 2e-90 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10035920 [exp] 254 / 7e-79 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1) Lus10025742 [exp] 218 / 4e-66 AT2G22360 504 / 4e-179 DNAJ heat shock family protein (.1) Lus10027634 [exp] 193 / 1e-55 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 189 / 1e-54 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G035300 [exp] 535 / 0 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.003G031800 [exp] 366 / 8e-122 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G073900 [exp] 291 / 2e-93 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 285 / 4e-91 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.009G065500 [exp] 195 / 2e-56 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 189 / 1e-54 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G160200 [exp] 184 / 4e-52 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.009G015700 [exp] 138 / 8e-36 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 131 / 2e-33 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 130 / 5e-33 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031336 pacid=23151039 polypeptide=Lus10031336 locus=Lus10031336.g ID=Lus10031336.BGIv1.0 annot-version=v1.0 ATGCCGATGATCCAAACCCATTCCTCCCGCCTCATATTCCCCAGCTACCACTCTTCGTTTCCAGGTGCTCCAATTCAACATTGTGATTCCTTGCGATTCG GTTTCTCCGCCGCCTCTTACCACATCGGGGTTAGATTCTCCTCCTCCGCCGGCTCTCGCAGGCGGAGTCGCGGCGGGATGGTTAGAGTAGCTGCTGCTAC TGGGAAAGATCACTACTCGACGCTGAAAGTGAAAAGGAACGCGTCGTTGCAGGAGATCAAGACTGCTTACAAGAAGCTGGCTCTTAAGTATCATCCGGAC TTGAACAGGAAACCTGGAGCTGAAGATAAGTTCAAAGAGATTAGTGCAGCATACGAGGTCCTTTCAGATGAGGAGAAACGGTCCGCCTACGATCAATTCG GAGAAGCAGGCTTGCAAGGGAACTTTGATACATCAGCTGGTGGTTTTCCAGAGATGGATCCATTTGACATATACAATACCTTCTTTGGCGGTTCAGATGG AATTTTCGGGAAAAGGGACGACGGTGCTGGCTTTAATTTCAATTTCAGAACTATGGCTAAGCAGGACCTTGACATCAAGTTTAACTTGTTCGTGAGCTTG GAAGAATCTGTTCTCGGAAGTGAGCAAGACATTGAAGTTTCTGGTTTCGAGACTTGCGGAACCTGTGACGGAACGGGAGCCAAATCCAGCGAATGCGTAA GACTGTGCAAGGAATGCGGTGGTAGAGGTGATATGATGAAAACCGTAAGAACACCATTTGGAATGATGTCACGGGTATCAACTTGCTCGAACTGTGACGG GAAAGGCAATATAATCACTGATTGCTGCCGAGGATGCTTCGGCACTGGCAAAGTAACTGTAGAACGGCAAATGACAGTGGTAATCCCACCTGGTGTTTAC AATGGAGCGACAATGCGGCTTCGAGGAGAGGGGAATTTCGATAAGAAGAGAGACATTTCTGGCGATCTATTCTTAACTATCAACGTCAATGAGAAGCGTG GAATTAAAAGGGAAGGACTCAATCTATACTCGAAAATCAACGTTGATTACACTGAGGCAATACTTGGCGCTGTGTTCAAGGTGGACACCGTCGAAGGCCC GAAAGACCTACCTATTCCTCCCGGGATCCAGTCCGGTGAAACTGTAAAATTGCGACGCCTAGGGGTTCCAGACGTAAACAAACCATCTGTCCGTGGTGAT CACCATTTCACGGTGAACGTTTTGATCCCCAAACGTATCAGTGACAGGGAAAGGTTACTCGTGGAAGAGCTGGCATCATTTAGATCATCCAGCAAAGCCA ACGATTTCGCTTCGAGTAAGTCCACTGGTGGTGCATCAATTTGGAGCAGAATCAAAGACTTCCTAGGGAAAGGAAGCGACGAACAGAGCTTTTCGTCGAT TACTCTCAGCACATCGGCCATGACATTGGCACGAAAATCGGATTCTCCCGTCCAGTTATCGATACTAGGAATCGTTTCGCTGACGATGTTCGTGGCATTC ATACGGAGGATTAGCAAGAGCAGTTAG
AA sequence Show only first row Show all	>Lus10031336 pacid=23151039 polypeptide=Lus10031336 locus=Lus10031336.g ID=Lus10031336.BGIv1.0 annot-version=v1.0 MPMIQTHSSRLIFPSYHSSFPGAPIQHCDSLRFGFSAASYHIGVRFSSSAGSRRRSRGGMVRVAAATGKDHYSTLKVKRNASLQEIKTAYKKLALKYHPD LNRKPGAEDKFKEISAAYEVLSDEEKRSAYDQFGEAGLQGNFDTSAGGFPEMDPFDIYNTFFGGSDGIFGKRDDGAGFNFNFRTMAKQDLDIKFNLFVSL EESVLGSEQDIEVSGFETCGTCDGTGAKSSECVRLCKECGGRGDMMKTVRTPFGMMSRVSTCSNCDGKGNIITDCCRGCFGTGKVTVERQMTVVIPPGVY NGATMRLRGEGNFDKKRDISGDLFLTINVNEKRGIKREGLNLYSKINVDYTEAILGAVFKVDTVEGPKDLPIPPGIQSGETVKLRRLGVPDVNKPSVRGD HHFTVNVLIPKRISDRERLLVEELASFRSSSKANDFASSKSTGGASIWSRIKDFLGKGSDEQSFSSITLSTSAMTLARKSDSPVQLSILGIVSLTMFVAF IRRISKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031336 [exp]	0	1
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	2.2	0.9044
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	4.2	0.8856
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	9.3	0.8968
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10025693 [exp]	9.8	0.8794
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016405 [exp]	11.7	0.8422
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009050 [exp]	13.5	0.8749
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	14.1	0.8638
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10007989 [exp]	15.3	0.8488
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10028054 [exp]	16.0	0.8086
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	16.0	0.8833

Compare expression of checked genes

Lus10031336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.