Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48480 623 / 0 RKL1 receptor-like kinase 1 (.1) AT3G17840 603 / 0 RLK902 receptor-like kinase 902 (.1) AT3G02880 346 / 3e-110 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 338 / 5e-107 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT5G58300 333 / 5e-105 Leucine-rich repeat protein kinase family protein (.1.2) AT2G26730 332 / 1e-104 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 317 / 6e-99 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 310 / 4e-96 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G08680 306 / 4e-95 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 298 / 7e-92 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017996 [exp] 714 / 0 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10031909 [exp] 563 / 0 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10002299 [exp] 409 / 1e-138 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10004040 [exp] 408 / 8e-134 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10031350 [exp] 374 / 4e-121 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10010973 [exp] 374 / 4e-121 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10041992 [exp] 330 / 4e-109 AT3G17840 343 / 2e-115 receptor-like kinase 902 (.1) Lus10017756 [exp] 338 / 8e-107 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 336 / 6e-106 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G044600 [exp] 679 / 0 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.015G035500 [exp] 676 / 0 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.004G086100 [exp] 413 / 3e-136 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 413 / 5e-136 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 339 / 2e-107 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 339 / 2e-107 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 338 / 3e-107 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 321 / 1e-100 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 319 / 4e-99 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G136100 [exp] 313 / 8e-98 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031337 pacid=23151000 polypeptide=Lus10031337 locus=Lus10031337.g ID=Lus10031337.BGIv1.0 annot-version=v1.0 ATGCAGACCCACAAGCTCCTTTTCGCTATCCTATTCCTCACCCTTCTCCCGAATTCAACCCCAGATCTCGCCGGCGATAGAGCGGGCCTCCTCCGCCTCC GCGCCGCCGCTGGCGGCCGCACACGCTCCTGGAACGTCACTCAGCTCACCCCATGTTCATGGCCGGGAGTCACCTGCGAGCAGAACAGAGTCACAATGCT TCGTCTACCCAGCGTCGCACTCTCCGGCGACCTCCCCTCCGGCGTCTTCGGCAACTTGACCGAGCTACGAACTCTAAGCCTCCGCCTCAACTCCCTTACC GGAGCCCTCCCTTCAGATCTAGCTTCGTGTACTCACCTCCGGAACTTGTACCTCCAAGGGAACTCATTCTCCGGCGAGATTCCGGCTTTTATTTTCACTC TCCGTGACCTGGTCCGCCTCAACCTCGGCGAAAACAGCTTCGCCGGTAAAATCCCTTCCGGATTCGAGAACCTTGCTAGACTCAAGACTCTCTTCTTGGA GAACAACAATCTCTCCGGTTCAATCCCGTCCGGAAAGTTCTTGAAGCTCGAGCAGTTCAACGTCTCCAACAATCCCCTGAACGGCTCGATTCCTTCTAGA CTTAGAACGTTCGATGGGACATCGTTTATGGGGACTTCACTCTGCGGTTCGCCTCTAAAAGTTTGTCCCGTCGATGAAGCGCGTGGCACTGTAGTAATCC CTAACACGCCGCCGTCGGCGGCGAACGGGGAATCGAAAAAGAAGAGGCTTTCCGGCGGGGCAATCGCCGGGATTGTGATCGGATGCTTGGTGGGGCTTTT GTTGATTGTTGTGGCTATGGTGATTCTGTCGAGGAAAGTTAGTAGTAGGAGGAAGAAGTCTATGGACATTGCTACTCTGAAGCCTCAGGACTTGGAAGTT GCGCCGGAGAAGACAATGGCGGATGTTGAGAACAGTAGCCGTGGAAATGGCGGATACTCGGTGGCTGCCGCCGCCGCGGCTGCCATGGTTGGTGATGGTA AAGGTGGAGGTGGAGGTCTGGATCAAGATTCCACAGTCGTGATTTCAGATTTTGACTGCAATGATTTGATCGATGCAGGGGACGCGAAGAGACTGGTGTT CTTCGGGAAATCCGAACGGACATTCGATCTGGAGGACTTGTTGAGAGCATCCGCCGAAGTTCTTGGTAAAGGAACATTCGGATCCGCATACAAAGCAGTG CTGGAGTTTGGAACTGTGGTGGCTGTGAAGAGATTGAGAGATGTGAATGTATCGGAAGGCGAGTTCAAGGAGAAGATCGAGCTCGTCGGAGCCATGGATC ACCATAGCTTGGTTCCATTGAAAGCTTATTACTACAGCAGGGATGAGAAGCTTCTTGTCTATGATTACTTGCCCATGGGAAGCTTGGCTGCTCTTCTTCA CGGCAACAAGGGCACCGACAAGACACCACTGAACTGGCAAATCCGATCCAAAATCGTGCTAGGAGCAGCTCGAGGAATCGAGTACCTACATTCGCAGTCC CCGGAAACCTCCCACGGAAACATCAAGTCCTCCAACATCCTCCTTACATCAAACCACGACCCAAAAGTCTCCGATTTCGGCCTCTCGTCTCTCGTCAGCA GCGCCTCGTCATCATCGTCAACCTTCCCCATAAGGGTGACAGGGTACCGTGCGCCTGAAGTAACCAACCCACGCAGCGTCTCCCAGAAGGCCGACGTCTA CAGCTTCGGCGTGCTCCTCCTCGAGATCGTAACGGGGAAGGCTCCGACTAACGCGGTCACCAACGAGGAAGGCGTCGACTTGCCTCGGTGGGTCCAGTCC GTGGTGAAGGAAGAGTGGACCTCTGAAGTGCTTGATGTTGAGCTGCTAAGGTATGAGAATGTCGAGGAAGAGATGGTCCAGATGTTGCAGCTTGGTGTCG ACTGCTCGGCTCAGTTCCCCGATAGTCGTCCCTCGATCGAGGAGGTGACGAGGCGGATCGAGGAGATTGTTGTTGCTGGAGATCGTCCGGTGAAGGAGGT TACCCCCGCCATTGTTGGAGAATGA
AA sequence Show only first row Show all	>Lus10031337 pacid=23151000 polypeptide=Lus10031337 locus=Lus10031337.g ID=Lus10031337.BGIv1.0 annot-version=v1.0 MQTHKLLFAILFLTLLPNSTPDLAGDRAGLLRLRAAAGGRTRSWNVTQLTPCSWPGVTCEQNRVTMLRLPSVALSGDLPSGVFGNLTELRTLSLRLNSLT GALPSDLASCTHLRNLYLQGNSFSGEIPAFIFTLRDLVRLNLGENSFAGKIPSGFENLARLKTLFLENNNLSGSIPSGKFLKLEQFNVSNNPLNGSIPSR LRTFDGTSFMGTSLCGSPLKVCPVDEARGTVVIPNTPPSAANGESKKKRLSGGAIAGIVIGCLVGLLLIVVAMVILSRKVSSRRKKSMDIATLKPQDLEV APEKTMADVENSSRGNGGYSVAAAAAAAMVGDGKGGGGGLDQDSTVVISDFDCNDLIDAGDAKRLVFFGKSERTFDLEDLLRASAEVLGKGTFGSAYKAV LEFGTVVAVKRLRDVNVSEGEFKEKIELVGAMDHHSLVPLKAYYYSRDEKLLVYDYLPMGSLAALLHGNKGTDKTPLNWQIRSKIVLGAARGIEYLHSQS PETSHGNIKSSNILLTSNHDPKVSDFGLSSLVSSASSSSSTFPIRVTGYRAPEVTNPRSVSQKADVYSFGVLLLEIVTGKAPTNAVTNEEGVDLPRWVQS VVKEEWTSEVLDVELLRYENVEEEMVQMLQLGVDCSAQFPDSRPSIEEVTRRIEEIVVAGDRPVKEVTPAIVGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031909 [exp]	1.0	0.9759
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017412 [exp]	2.8	0.9306
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	3.0	0.9221
AT1G12460			Leucine-rich repeat protein ki...		Lus10006675 [exp]	3.5	0.9000
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017413 [exp]	5.9	0.9182
AT3G18600			P-loop containing nucleoside t...		Lus10009616 [exp]	6.3	0.9088
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10006069 [exp]	6.7	0.9088
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	8.4	0.9114
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028224 [exp]	10.5	0.9064
AT1G33250			Protein of unknown function (D...		Lus10008293 [exp]	10.6	0.8984

Compare expression of checked genes

Lus10031337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.