Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46160 77 / 5e-17 Protein kinase superfamily protein (.1) AT3G46140 72 / 3e-15 Protein kinase superfamily protein (.1) AT3G06030 71 / 1e-14 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G54960 69 / 3e-14 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT3G45790 69 / 5e-14 Protein kinase superfamily protein (.1) AT3G50310 68 / 6e-14 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT1G09000 69 / 7e-14 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT2G05060 67 / 1e-13 Protein kinase superfamily protein (.1) AT2G32510 66 / 3e-13 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT2G42550 66 / 3e-13 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031910 [exp] 207 / 1e-69 AT3G46140 86 / 2e-20 Protein kinase superfamily protein (.1) Lus10029047 [exp] 107 / 8e-30 AT3G50310 93 / 5e-23 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029019 [exp] 104 / 5e-29 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10026894 [exp] 105 / 5e-28 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029023 [exp] 100 / 1e-26 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034242 [exp] 100 / 9e-26 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039141 [exp] 99 / 2e-25 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10034285 [exp] 99 / 2e-25 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034288 [exp] 97 / 8e-25 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131100 [exp] 71 / 4e-15 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.007G044800 [exp] 69 / 3e-14 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 68 / 6e-14 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.007G106800 [exp] 67 / 1e-13 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G172200 [exp] 67 / 1e-13 AT4G08500 421 / 6e-141 MAPK/ERK kinase kinase 1 (.1) Potri.012G143900 [exp] 66 / 5e-13 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 66 / 5e-13 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.008G149500 [exp] 65 / 1e-12 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.005G033400 [exp] 65 / 1e-12 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.002G088900 [exp] 65 / 1e-12 AT4G08500 411 / 4e-137 MAPK/ERK kinase kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031338 pacid=23151091 polypeptide=Lus10031338 locus=Lus10031338.g ID=Lus10031338.BGIv1.0 annot-version=v1.0 ATGAACGATTATGAGGGAGTTCGGGACTACAGAGGGACTGCGAGGTACATGCCGCCGGAGATGATGAACTGCAAGAAGGTTTCGCCGGCGATGGGCGTGT GGGCCCTCGGGTGCACGGTTCTCGAGATGCTGACCGGCGATCGCCCGTGGAAAGGGTGGACTGGTAAGGAAGAGGGGCTCGAGGTTGAGATCGGGAGAGG CGGTCATCCGGTGATTGCGGATTGGCTTTGTGAGGAAGCCAAGGATTTCTTGGGGATGTGCTTTGAGATTAGCTCGCTTCGCCGGGCGAATTGCTGGGAT CTGCTCCGGCACCAGTTCGCCGGAGGCCGACGGCGCGTGGAGCCGGTGAAGATAAGGGTGCCGGAGCCGGTGAAGGTGCCCGAGTCGTCGAAGGTGAGGG TGCCGGTGAAAGTGAGGGTGCCGGTGAAGGCGAGCGTGCCGGAGCCGGTGGAGGAGGCTAGGATCCTAATCACCTTTTACTGCCTCATTTGA
AA sequence Show only first row Show all	>Lus10031338 pacid=23151091 polypeptide=Lus10031338 locus=Lus10031338.g ID=Lus10031338.BGIv1.0 annot-version=v1.0 MNDYEGVRDYRGTARYMPPEMMNCKKVSPAMGVWALGCTVLEMLTGDRPWKGWTGKEEGLEVEIGRGGHPVIADWLCEEAKDFLGMCFEISSLRRANCWD LLRHQFAGGRRRVEPVKIRVPEPVKVPESSKVRVPVKVRVPVKASVPEPVEEARILITFYCLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46160			Protein kinase superfamily pro...		Lus10031338 [exp]	0	1
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10031389 [exp]	3.9	0.8197
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	13.5	0.8403
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	18.2	0.8389
AT3G47570			Leucine-rich repeat protein ki...		Lus10035724 [exp]	20.2	0.8381
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	26.9	0.8369
AT5G60330			unknown protein		Lus10018274 [exp]	29.3	0.8353
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	34.2	0.8338
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	34.3	0.8326
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	37.1	0.8309
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	39.3	0.8302

Compare expression of checked genes

Lus10031338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.