Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36950 102 / 1e-26 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT3G50310 97 / 1e-24 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT3G45790 95 / 1e-23 Protein kinase superfamily protein (.1) AT3G46140 92 / 1e-22 Protein kinase superfamily protein (.1) AT5G27510 91 / 1e-22 Protein kinase superfamily protein (.1) AT5G55090 92 / 2e-22 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT4G26890 92 / 3e-22 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT5G67080 89 / 2e-21 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT3G45670 87 / 5e-21 Protein kinase superfamily protein (.1) AT2G32510 87 / 6e-21 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034288 [exp] 142 / 4e-42 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 140 / 1e-41 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034242 [exp] 138 / 7e-41 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039141 [exp] 125 / 9e-36 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10026894 [exp] 116 / 2e-32 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034216 [exp] 101 / 7e-28 AT5G27510 107 / 2e-28 Protein kinase superfamily protein (.1) Lus10029018 [exp] 94 / 5e-25 AT3G46140 52 / 7e-17 Protein kinase superfamily protein (.1) Lus10017114 [exp] 90 / 3e-22 AT3G50310 127 / 3e-34 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10012668 [exp] 89 / 1e-21 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131100 [exp] 117 / 7e-33 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.003G184200 [exp] 111 / 8e-30 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.001G042400 [exp] 109 / 5e-29 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.006G181000 [exp] 107 / 2e-28 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.007G044800 [exp] 99 / 1e-25 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 98 / 5e-25 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 92 / 6e-23 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.004G007700 [exp] 92 / 3e-22 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.011G007400 [exp] 91 / 8e-22 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.001G278600 [exp] 90 / 1e-21 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031339 pacid=23150991 polypeptide=Lus10031339 locus=Lus10031339.g ID=Lus10031339.BGIv1.0 annot-version=v1.0 ATGGCTCCCGGCTGGTATCGTGGGGAGAAATTAGGCAAAGGAGGATACGGAGAAGTATTCATAGCCGTCCCTGAAAAGCCAGGCCAGCTCATGGCCGTCA AATCGGCTCCCGAACACGAAGCCGATACGCTAATCAAAGAGCGTGACTTCCTAGAGAAACTTGCCGGCGTACCTGGAATCGTCCGCTGCTACGGCGGAGA GTTCACCGGAGAGAATCCGAGGACCTTCAACTTGCTCCTCGAGTACGCCCCCGTGGGGAATTTATGCGATTTGATCAGCTCCAGCGGATTGGGTATCCCG GAACGGTTCGTCAGGGTTTTCACCCGGTCGTTGCTCAAGGCGCTGAAGACGATCCATTCACGCCGGTGGGTTCACTGTGATATCAAGCCGGACAACATCC TCGTGTTCCCTCCGCAGCCGGGAGCCGCCAGCCGGTGGGATTAA
AA sequence Show only first row Show all	>Lus10031339 pacid=23150991 polypeptide=Lus10031339 locus=Lus10031339.g ID=Lus10031339.BGIv1.0 annot-version=v1.0 MAPGWYRGEKLGKGGYGEVFIAVPEKPGQLMAVKSAPEHEADTLIKERDFLEKLAGVPGIVRCYGGEFTGENPRTFNLLLEYAPVGNLCDLISSSGLGIP ERFVRVFTRSLLKALKTIHSRRWVHCDIKPDNILVFPPQPGAASRWD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10031339 [exp]	0	1
AT4G04980			unknown protein		Lus10031636 [exp]	1.4	0.7920
AT3G45400			exostosin family protein (.1)		Lus10020308 [exp]	12.7	0.6967
AT1G79960	OFP	ATOFP14, OFP14	ovate family protein 14 (.1)		Lus10035891 [exp]	15.7	0.7191
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10040738 [exp]	28.0	0.6532
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10021222 [exp]	28.8	0.6679
AT1G20925			Auxin efflux carrier family pr...		Lus10004287 [exp]	56.9	0.6200
AT3G04890			Uncharacterized conserved prot...		Lus10009193 [exp]	59.2	0.5997
					Lus10027520 [exp]	64.4	0.6162
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	66.9	0.6231
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Lus10026185 [exp]	74.5	0.5634

Compare expression of checked genes

Lus10031339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.